Input parameters:

  Query = AT3G48770.1 (Len=1899)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G48770.1, Len=1899):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKAFSPNTSNIKQEKSSNRSSHHKQDLAWNYVREAIDSRRRKVITCGFCGKQYVGSEINRMKHHLAGLNNRSACQKVSS 80  
WD40-rpts                                                                                      

Query       81 EVQHSMRKSLEENKEKPKKIIVVDLDMQDDEVNVGQSSHQSCSSSSRKRKVQHSMRKSLEETEEKLKQIIVVDLDMQDNE 160 
WD40-rpts                                                                                      

Query      161 VNVGQSSLQSFSSSNRKRKRETKTKPVIIETMTESAKQHIERIRRTKFSIGGAENPLTEDLHQAVKNLSAELYAKDVHFL 240 
WD40-rpts                                                                                      

Query      241 MELIQNAEDNEYPEGVDPSLEFVITSEDITNTGAPATLLIFNNEKGFSEKNIESICSVGRSTKKGNRKCGYIGEKGIGFK 320 
WD40-rpts                                                                                      

Query      321 SVFLITSQPYIFSNGYQIRFNEAPCSHCSLGYIVPEWVDQHPSLVDIQRMYGSGSALPTTTIILPLKSDKVKPVKEQLSN 400 
WD40-rpts                                                                                      

Query      401 VHPEVLLFLSKIKRLSIREHCLDPKLSTVNSIGIVSETNFVTRKSIDAESYTIHLSASEKGKNSEQECSYYMWRQKFPVK 480 
WD40-rpts                                                                                      

Query      481 HENRVDRRSEVEEWVITLAFPFGERLGHGNNSPGIYAFLPTEMVTNFPFIIQADFILASSREMILLDDIWNQGILNCVPL 560 
WD40-rpts                                                                                      

Query      561 AFLNAFTSLVKTTDAPVSSLLPAFRFLPVKESNYAKLNVVRESIRARVCAEEIVPSISHQGQKFFYKPCEVGRLIPTFWD 640 
WD40-rpts                                                                                      

Query      641 ILEKAGSEGASLQNISSHGIYILNSAFDRTEYDNVLNFLGLKQVSNEWYVKCIQGCDLVTSVSEATYVEVLLFIAENWQC 720 
WD40-rpts                                                                                      

Query      721 RFQNTNMGKVPLIKYVVQKGVSSLSSLGGFSPRTLCLSTEKNQAWLLDWNDEFRCMSNFVFMPPTTRTALKVCSKKEIIH 800 
WD40-rpts                                                                                      

Query      801 TWLKENVKVITLSVSDYAKHLRENLNGDKRLVVAYAHFLHHSISKDFLSKEEAGKCCKDMPLVDNYGNVNISRNGVLVPA 880 
WD40-rpts                                                                                      

Query      881 SAGKWVSLVGSNPWRHSGYIELSEEYLLSNRFAGLRSNKKDLLGFLKSSVEAGDIPDIEPPNVAIPALSGPLTKENVLLL 960 
WD40-rpts                                                                                      

Query      961 LEWINKCNRHSLRSNFLNSVRGGSWLRTTMNGVSDYRPPSQSFYHTSSWGSILQNGSILVDIPLVDRSYYGNEIEKYKEE 1040
WD40-rpts                                                                                      

Query     1041 LKIAGVMFEFSEVCRFVGNHLMSLAETSTQSSANVFSILKFIRYLREKRLSPADFITAVKNGPWLKTISGYRSPDGAVLF 1120
WD40-rpts                                                                  (_________________WD

Query     1121 SEEWKAASLISDIPFIDRGFYGVVSLNGYKEELELLGVVVKFPDNYSLIVSHLNTAKLTYLTPDAMFLVLDCMRQLSPHR 1200
WD40-rpts       1_________________)                                                            

Query     1201 LINALWNSSQCFKTKKNGYKSPAECFIPDPEWTCLLSVFDCFPLIDDDFYGSRIFAYKGELKQIGVKLQLEEAVKMFVST 1280
WD40-rpts                                                                                      

Query     1281 FKQKAISSGLTRCTASSLLSCYKKLMGSLYKYPEELMKSFKQFQWLHTKLGDFRAPKDCILFDSEWEPLRLIANLPFIDD 1360
WD40-rpts                                                                                      

Query     1361 GPNWYGKSIHEFRKELESLGVTVELRKGMSHVISSLSLPDPSRIAPSSALSLFRCIKFLREDRFQQLPKELLDKVSVKWL 1440
WD40-rpts                                                                                      

Query     1441 KTHAGYRSPEECLLFDRTWKLEPCDGPFIDEEYYGSDINSFREELIAIGVGHDSDKACQLLARNVYKLSETDAISRVYRF 1520
WD40-rpts                                                                                      

Query     1521 LSEAEWKPEKGASSGRIWIPSDEKWADISSCVLFDKDKLFGSKFNVLENHYCSGKDHNLLGFFSSAFGVRINPSIEDYCE 1600
WD40-rpts                                                                                      

Query     1601 LWKYWEKTKNRLSSHECCAFWSFVVRHGDTVKAEKLLSESFSRLPVHSPDCNNNDGVMLSSISDVFIADDLLLKDMFIDS 1680
WD40-rpts                                                                                      

Query     1681 PVFVWYPTPSIPTLSRTRLIEIYRNIGVKEVSKCVEIAEADLTGFKTELQEVVDPKKNLIGPGLVKLILAFLSDPSLKVE 1760
WD40-rpts                                                                                      

Query     1761 TAERLRIIHSLVDIDVKETSETITTEYTLSLPSKGEKLIAKAKRMIRWEREKGVVYAEKMEKTCGKRKLLEYATCFAEVI 1840
WD40-rpts                                                                                      

Query     1841 AKGVMWEREDLIGRLSELVKMAYLVEFDEEALEFLMKSKNLQVYEEDEKLISDEFSQVN 1899
WD40-rpts                                                                 

1 WD40-repeats found in QUERY=AT3G48770.1 (Len=1899):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 31  1101-1140     3.13  244.14  0.03147       30.0%     15.16

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1101-1140   NGPWLKTISGYRSPDGAVLFSEEWKAASLISDIPFIDRGF

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD