Input parameters:

  Query = AT3G47760.1 (Len=872)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G47760.1, Len=872):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGNHVPAGFFTQANSLFRKNLTYQKRNIWSNVRLIVIPFYLCVLLVGIQVLFDTQVNNSADNRCGCRCIDKNGDGKCGQK 80  
WD40-rpts                                                                                      

Query       81 SCGLQYSSQNQAFFCAFPNPPPLLPLLHIPRPETRSSDRDRDSCRQTGSCPVTILLTGNNHSLGTNYTNYLDPGILSDLP 160 
WD40-rpts                                                                                      

Query      161 IFNVQPRCTPDTTTFSFPFRQSPLEFHKEVRCVEGLNLWRNNSIEISNEIFKGYRQGNLEEIINEVAAAYDLMDTDINNF 240 
WD40-rpts                                                                                      

Query      241 NVTIWYNSTYKGDLRDRRVKYVRVPRSVNLVSNAYLEFLQGSGTKMLFDFVKEMPKQETRLRLEMASLIGPIFFTWVILL 320 
WD40-rpts                                                                                      

Query      321 LFPVMLTSLVYEKQQHLRIIMKMHGLGDEQVSELFLLVGLKFFRFNDYSIQFIFYFLCINLQISIAFLVSSAFSKIETAS 400 
WD40-rpts                                                                                      

Query      401 VAAYLYVFGSGLLGAFLFQFLLEGSWIYIMELYPGFSLYRGLYEFSQYAFKRNLNGSGGMKWKDFNDSAMEEIFYIIIVE 480 
WD40-rpts                                                                                      

Query      481 WFVALIAAYYTDKISSSGIDPFFFLKNQNPFKKSPSPYGLQRQVSAIAIEMEKLDVAHELMLETSTGHAIVCDNLKKVYP 560 
WD40-rpts                                                                                      

Query      561 CRDGNPQKMAVRGLSLAVPSGECFGMLGPNGAGKTSFINMMTGLMKPTSGAAFVHGLDICKDMDIVYTSIGVCPQHDLLW 640 
WD40-rpts                         (____________________________WD 1____________________________

Query      641 ETLTGREHLLFYGRLKNLKGSDLDQAVEESLKSVNLFRGGVADKPAGKYSGGMKRRLSVAISLIGSPKVVYMDEPSTGLD 720 
WD40-rpts      )                                                                               

Query      721 PASRRSLWTAIKRAKNHTAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTPSEHEKDVEMLV 800 
WD40-rpts                                                                                      

Query      801 QDVSPNAKKIYHIAGTQKFEIPKEEVRISEVFQAVEKAKDNFRVFAWGLADTTLEDVFIKVARTAQASNVFS 872 
WD40-rpts                                                                              

1 WD40-repeats found in QUERY=AT3G47760.1 (Len=872):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   580-641      3.10  242.79  0.03279       25.0%     20.68

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  580-641    SGECFGMLGPNGAGKTSFINMMTGLMKPTSGAAFVHGLDICKDMDIVYTSIGVCPQHDLLWE

   WD40 Template    TGECLRTLSGHTSGVT-------SVSFSPDGKRLVSGSEDGTI---------------KVWD