Input parameters:

  Query = AT3G46220.2 (Len=812)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G46220.2, Len=812):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDELLELQRQFEFAQQVKSSVRLSDRNVVELVQKLQELGVIDFDLLHTVTGKEYITQEQLRNEITREISKLGRVSVIDL 80  
WD40-rpts                                                                                      

Query       81 ADTIGVDLYHVEKQAQDVVLNDPGLMLVQGEIISQSYWDSIAEEINERLQECSQIAVAELAGQLQVGSELVQSVLEPRLG 160 
WD40-rpts                                                                                      

Query      161 TLVKARLEGGQLYTPAYVERVTAMVRGASRGIFVPSNLSALWAPLQQLVQETNGASGVAVENSFFQSIFNRLLKEEEMLG 240 
WD40-rpts                                                                                (_____

Query      241 SLRAGTHWTPSAFATAQKECVDSSFSQNSYISYESMQKLGISQAVQFLQSRYPDGTPLAAVFIHSSMIEMLDSATEDAIE 320 
WD40-rpts      ________________________________________WD 1____________________________________

Query      321 QNSWIDSLSVLPSSFTSQDANKMLLLCPSVQSALKAEKALILGESYVLSSGFIKGIYDQIEKEADAFSIQASTATLIHPS 400 
WD40-rpts      ________)                                                                       

Query      401 SKSSESTESIPANTDKGSKKKKGKSASTKAATVETVPDDEEDARPKSKRNQKKGRDSSSSQKLDSKAGGKKESVKAQESN 480 
WD40-rpts                                                                                      

Query      481 NIIPPDEWVMKKIVDSVPEFEDDGTSENFFLCTENPDSILKHLADHMKPMLINSLKERRKKIFTENADRMRRLIDDLQKK 560 
WD40-rpts                                                                                      

Query      561 LDESFLNMQLYEKALDLFEDDQSTAVVLHRHLLRTTAATIADTLLHGLDIHNKMKNGTEVEESKTQDLVLLDSSERTALA 640 
WD40-rpts                                                                                      

Query      641 KNLNGSLSKKALALVEALEGKRVDTFMVTFRDLAEESGLVLKKLDKKLERTLLHSYRKDLISQVSTESDPIALLAKVVSL 720 
WD40-rpts                                                                                      

Query      721 LFIKIHNKALQAPGRAIAAAISHLKEKLDESAYKTLTDYQTATVTLLALMSASSGEEHDCSADRILTKRELLESQMPLLR 800 
WD40-rpts                                                                                      

Query      801 TLVLGDSQPQQS 812 
WD40-rpts                  

1 WD40-repeats found in QUERY=AT3G46220.2 (Len=812):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   235-329      2.92  235.46  0.04099       25.0%     15.27

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  235-329    EEEMLGSLRAGTHWTPSAFATAQKECVDSSFSQNSYISYESMQKLGISQAVQFLQSRYPDGTPLAAVFIHSSMIEMLDSATEDAIEQNSWIDSLS

   WD40 Template    TGECLRTLSGHTSGV-------------------TSVSF---------S---------PDGKRLV--SGS----------------EDGTIKVWD