Input parameters:

  Query = AT3G46220.1 (Len=804)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G46220.1, Len=804):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDDELLELQRQFEFAQQVKSSVRLSDRNVVELVQKLQELGVIDFDLLHTVTGKEYITQEQLRNEITREISKLGRVSVIDL 80  
WD40-rpts                                                                                      

Query       81 ADTIGVDLYHVEKQAQDVVLNDPGLMLVQGEIISQSYWDSIAEEINERLQECSQIAVAELAGQLQVGSELVQSVLEPRLG 160 
WD40-rpts                                                                                      

Query      161 TLVKARLEGGQLYTPAYVERVTAMVRGASRGIFVPSNLSALWAPLQQLVQETNGASGVAVENSFFQSIFNRLLKEEEMLG 240 
WD40-rpts                                                                                (_____

Query      241 SLRAGTHWTPSAFATAQKECVDSSFSQNSYISYESMQKLGISQAVQFLQSRYPDGTPLAAVFIHSSMIEMLDSATEDAIE 320 
WD40-rpts      __________________________________________WD 1__________________________________

Query      321 QNSWIDSLSVLPSSFTSQDANKMLLLCPSVQSALKAEKALILGESYVLSSGFIKGIYDQIEKEADAFSIQASTATLIHPS 400 
WD40-rpts      ____________)                                                                   

Query      401 SKSSESTESIPANTDKGSKKKKGKSASTKAATVETVPDDEEDARPKSKRNQKKGRDSSSSQKLDSKAGGKKESVKAQESN 480 
WD40-rpts                                                                                      

Query      481 NIIPPDEWVMKKIVDSVPEFEDDGTENPDSILKHLADHMKPMLINSLKERRKKIFTENADRMRRLIDDLQKKLDESFLNM 560 
WD40-rpts                                                                                      

Query      561 QLYEKALDLFEDDQSTAVVLHRHLLRTTAATIADTLLHGLDIHNKMKNGTEVEESKTQDLVLLDSSERTALAKNLNGSLS 640 
WD40-rpts                                                                                      

Query      641 KKALALVEALEGKRVDTFMVTFRDLAEESGLVLKKLDKKLERTLLHSYRKDLISQVSTESDPIALLAKVVSLLFIKIHNK 720 
WD40-rpts                                                                                      

Query      721 ALQAPGRAIAAAISHLKEKLDESAYKTLTDYQTATVTLLALMSASSGEEHDCSADRILTKRELLESQMPLLRTLVLGDSQ 800 
WD40-rpts                                                                                      

Query      801 PQQS 804 
WD40-rpts          

1 WD40-repeats found in QUERY=AT3G46220.1 (Len=804):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   235-333      2.81  230.80  0.04723       25.0%     -1.87

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  235-333    EEEMLGSLRAGTHWTPSAFATAQKECVDSSFSQNSYISYESMQKLGISQAVQFLQSRYPDGTPLAAVFIHSSMIEMLDSATEDAIEQNSWIDSLSVLPS

   WD40 Template    TGECLRTLSGHTSGV-------------------TSVSF---------S---------PDGKRLV----------------------SGSEDGTIKVWD