Input parameters:

  Query = AT3G45620.1 (Len=481)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G45620.1, Len=481):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MARPRRRNTEIGDGFTEIFNREIGFSHPITISRRISASEGRVKKLDLYGKLNGHEGCVNAVEFNSTGDVLVSGSDDRQIM 80  
WD40-rpts                                            (____________________WD 1_________________

Query       81 LWNWLSGSRKLSYPSGHCENVFQTKFIPFTDDRTIITSGADGQVRLGQILENGKVETKRLGRHHGRVYKLAVLPGDPNVF 160 
WD40-rpts      __)    (__________________WD 2_________________)(____________________WD 3_______

Query      161 YSCGEDGFVQHFDIRSNSATMVLYSSPFTQGCRRHHSSSRIRLNSIAIDPRNSYYLAVGGSDEYARVYDTRRVQLAPVCR 240 
WD40-rpts      ____________)                   (________________WD 4_______________)           

Query      241 HVLPDAPVNTFCPRHLRETNSVHITGLAYSKAGELLVSYNDELIYLFEKNMGYGSSPVSVSPEKLQEMEEPQVYIGHRNA 320 
WD40-rpts                (________________WD 5________________)                   (____________

Query      321 QTVKGVNFFGPNDEYVTSGSDCGHIFIWKKKGGKLVRAMVGDRRVVNQLESHPHIPLLASCGIEKSVKLWTPMSNDVLSL 400 
WD40-rpts      ______WD 6__________________)   (_________________WD 7________________)   (_____

Query      401 PEKIDKVMELNRVGREDQSRVTLTPDVIMHVLRLQRRQTSAFTERRYVSTDIGSDEGNDARFIASLVANDDESSDRECTV 480 
WD40-rpts      ____________WD 8________________)    (_________________WD 9________________)    

Query      481 S 481 
WD40-rpts       

9 WD40-repeats found in QUERY=AT3G45620.1 (Len=481):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    39-83       9.48  506.34  9.3e-06       40.0%     55.71
  WD 2:  Seg  7    88-128      7.50  424.43  0.00012       25.0%     53.77
  WD 3:  Seg 11   129-173      6.66  389.70  0.00035       25.0%     54.72
  WD 4:  Seg 16   193-229      6.68  390.52  0.00034       22.5%     47.54
  WD 5:  Seg 20   251-288      5.67  348.81  0.00124       20.0%     42.60
  WD 6:  Seg 23   308-349      6.05  364.67  0.00076       30.0%     50.98
  WD 7:  Seg 27   353-391      8.78  477.34  2.3e-05       22.5%     56.62
  WD 8:  Seg 31   395-433      7.30  416.23  0.00015       10.0%     51.27
  WD 9:  Seg 35   438-476      5.12  326.00  0.00251       10.0%     33.95

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   39-83     EGRVKKLD----LYGKLNGHEGCVNAVE---FNS--TGDVLVSGSDDRQIMLWN
   WD 2   88-128    -S-----R----KLSYPSGHCENVFQTK---FIPFTDDRTIITSGADGQVRLGQ
   WD 3  129-173    IL-----ENGKVETKRLGRHHGRVYKLA--VLPG--DPNVFYSCGEDGFVQHFD
   WD 4  193-229    -------------RRHHSSSRIRLNSIA---IDP-RNSYYLAVGGSDEYARVYD
   WD 5  251-288    -F-----C----PRHLRETNSVHITGLA---YSK--AGELLVSYN-DELIYLFE
   WD 6  308-349    -M-----E----EPQVYIGHRNAQTVKGVNFFGP--NDEYVTSGSDCGHIFIWK
   WD 7  353-391    -G-----K----LVRAMVGDRRVVNQLE---SHP--HIPLLASCGIEKSVKLWT
   WD 8  395-433    -N-----D----VLSLPEKIDKVMELNR---VGR--EDQSRVTLTPDVIMHVLR
   WD 9  438-476    -Q-----T----SAFTERRYVSTDIGSD---EGN--DARFIASLVANDDESSDR

   WD40 Template    TG-----E----CLRTLSGHTSGVTSVS---FSP--DGKRLVSGSEDGTIKVWD