Input parameters:

  Query = AT3G44600.1 (Len=631)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G44600.1, Len=631):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEESKNGGTTIPTEELAVVAVPPVVEEEEPMVGPGPAPRGKRKRPLQFEQAYLDSLPSANMYEKSYMHRDVVTHVAVSA 80  
WD40-rpts                                                             (__________________WD 1__

Query       81 AEFFISGSMDGHLKFWKKKGVGIEFAKHFRSHLGPIEGLAVSIDGLLCCTISNDHAVKIYDVVNYDMMAMIRLPYIPGAV 160 
WD40-rpts      ________________) (___________________WD 2__________________)                   

Query      161 EWVYKQGDVKAKLAVSDRDSLFVHIYDPRSGSNEPIASKEIHMNPIKVMKYNPVSDTMISGDTKGIIEYWSATTLQFPED 240 
WD40-rpts                                      (_________________WD 3________________)        (

Query      241 EVNFKLKSDTNLFEIIKCKTTISAIEVSPDGKQFSITAPDRRIRVFWFRTGKLRRVYDESLVVAQDLQRSDAPLYRLEAI 320 
WD40-rpts      _____________________WD 4_____________________)                                 

Query      321 DFGRRMAVEKELEKTESAPQPNAVFDESSNFLIYATFLGIKVINLHTNTVARILGKVESNERYLRVALYQGDQGGKKVRK 400 
WD40-rpts                                                                                      

Query      401 IPAAAANVNESKEPLTDPTILCCAFKKHRIYMFSRREPEEPEDASQGRDVFNEKPAADELMSVSDIGNSATTSLPENVIM 480 
WD40-rpts                                                                                      

Query      481 HTTLGDIHMKLYPEECPKTVENFTTHCRNGYYDNHLFHRVIRGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPF 560 
WD40-rpts                                                                                      

Query      561 TLSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQGIEKVKTDKNDRPYQDVKILNVTVPKS 631 
WD40-rpts                                                                             

4 WD40-repeats found in QUERY=AT3G44600.1 (Len=631):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    56-97       3.82  272.35  0.01323       30.0%     37.40
  WD 2:  Seg  4    99-141      6.04  363.98  0.00077       25.0%     54.44
  WD 3:  Seg 12   193-231      3.74  269.26  0.01455       20.0%     47.45
  WD 4:  Seg 16   240-287      4.15  286.27  0.00861       27.5%     48.55

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-97     SL---PSANMYEKSYMHRD---------VVTHVAVSA-AEFFISGSMDGHLKFWK
   WD 2   99-141    KGVGIEFAKHFRS---HLG---------PIEGLAVSIDGLLCCTISNDHAVKIYD
   WD 3  193-231    -N---EPIASKEI---HMN---------PIKVMKYNPVSDTMISGDTKGIIEYWS
   WD 4  240-287    -D---EVNFKLKS---DTNLFEIIKCKTTISAIEVSPDGKQFSITAPDRRIRVFW

   WD40 Template    TG---ECLRTLSG---HTS---------GVTSVSFSPDGKRLVSGSEDGTIKVWD