Input parameters:

  Query = AT3G33530.1 (Len=1345)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G33530.1, Len=1345):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAASKPSPTDTWDSTLPGPPSRNNFGSADLSPSGLFAFASGSSVSVVDSRSLQLVSTIPLPPPPGALSPFVTSVRWIPLP 80  
WD40-rpts                                                                                  (___

Query       81 LPRDLLSTEPSASHLLLAVADRHGRVALVDFHLRSVVVWLNPSSDPKLGIQDLCWVQARHDSHVLAAISGSSFLSLYTTS 160 
WD40-rpts      ___________WD 1______________)   (____________________WD 2___________________)  

Query      161 GGLFWKYDAGTEILSCLRRDPYDSRHFCVLGLKGFLLSVKVLGDSENDVVIQEMQIKTDFSELPRLEREAASNGNSSSSS 240 
WD40-rpts      (_________________WD 3_________________)                                    (___

Query      241 PASAAFPLYFARFAFSPHWKNILFVTFPRELLVFDLQYETPLSTTPLPRGCAKFLDILPDPNKELLYCGHVDGRLSIWRR 320 
WD40-rpts      ______________WD 4________________)(___________________WD 5___________________) 

Query      321 KEGEQVHVMCTMEEFMPSIGMSIPSPSALAVLLSHSDSTMQTITKIHPDGTSSIDFDNPFDFYDESLLVSKTTFISLSDD 400 
WD40-rpts        (_________________WD 6________________)       (_________________WD 7__________

Query      401 GKIWKWVLSAEGVEDALKNASDLDMGIGATEAALPGAIQENDSSSLDDELVVAPTNRSRGHTSGSSMEKSDLSFKVGGWK 480 
WD40-rpts      ______) (_________________WD 8_________________)       (_________________WD 9___

Query      481 VFGAYTCLLRSMQISLTGQLQLLSSTVSTLAVPSPSLTATLARGGNIPAAAVPLVALGTQSGTIDVVDVSTNAVAASTSV 560 
WD40-rpts      _____________)        (____________________WD10____________________)   (________

Query      561 HTGVVRGLRWLGNSRLVSFSYSQVNDKSRGYINRLVVTCLRSGLNKPFRDLQKPERTPIRALRTSSSGRYLLILFRDAPV 640 
WD40-rpts      _________WD11________________)         (____________________WD12________________

Query      641 EVWAMTKHPVMLRSLALPFTVVEWTLPAVPRPGQGGPSKQSLSASEGVTASGDSWAVIDIFSASVGSDGSQEETVESFAF 720 
WD40-rpts      ___)                                                                            

Query      721 ALVNGALGVFEVQGRRIRDFRPKWPSTSFVPSDGLVTAMAYRLPHVVMGDRSGNIRWWDVTTGQSSAFNSHRDGIRRIKF 800 
WD40-rpts                            (________________WD13_______________)  (__________________

Query      801 SPVVAGDRSRGRVAVLFNDNTFSVFDLDSPDPLAQSLLQPQIPGTLVLELDWLPLRTDKNDPLVLCIAGADSTFRLVEVT 880 
WD40-rpts      __WD14___________________)             (_________________WD15________________)  

Query      881 VNEKKAGFVPQSKSVKERFRPMPMYSPILLPVPHALALRMILQLGVKPSWFNTSSTTLEKRPHLIRGMASSSKDLRSYMI 960 
WD40-rpts                                                                                      

Query      961 QLPPLGDPVVPEMLLKILEPYRKEGCLLDDERAKLYADVVKKGYAARFAFAASVFGETSEALFWLQLPQAIRHLMNKLTR 1040
WD40-rpts                                                                                      

Query     1041 RSPQKISSPTLDSGADEVAMPSKIPSTGLSSPEARKIDSMCDGSLRLMAFEREELRTRANERLPWHEKLDGEDCIQKQVH 1120
WD40-rpts                                                                                      

Query     1121 ELISVGNLEAAVSLLLSSAPDSPYFYPNALRAVALASAVSKSLLDLALKVVAANMVRTDNSLTGTHLLCAVGRHQEACSQ 1200
WD40-rpts                                                                                      

Query     1201 LQDSGRWTDAATLAATHLEGSDYARVLQRWADHVLHAEHNVWRALILYVAAGSLQEALAALREVQQPDTVAMFVLACQEI 1280
WD40-rpts                                                                                      

Query     1281 HSEIITELSTQDEESESASGDGTVPLPDLPGLESGKEEVTAVCEYFQQYQRKLVHLCMDSQPYTD 1345
WD40-rpts                                                                       

15 WD40-repeats found in QUERY=AT3G33530.1 (Len=1345):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    77-110      4.46  298.93  0.00582       12.5%     20.29
  WD 2:  Seg  7   114-158      4.03  281.17  0.01007       10.0%     42.06
  WD 3:  Seg 11   161-200      4.15  286.22  0.00862       12.5%     46.91
  WD 4:  Seg 16   237-275      5.38  336.86  0.00180       15.0%     37.37
  WD 5:  Seg 19   276-319      4.85  314.80  0.00356       17.5%     50.62
  WD 6:  Seg 23   323-361      3.15  244.91  0.03073       10.0%     30.03
  WD 7:  Seg 27   369-407      5.72  350.99  0.00116       17.5%     46.96
  WD 8:  Seg 31   409-448      4.52  301.48  0.00538       10.0%     18.50
  WD 9:  Seg 32   456-494      5.51  342.32  0.00152       12.5%     33.03
  WD10:  Seg 36   503-548      4.22  288.82  0.00795       22.5%     29.27
  WD11:  Seg 39   552-590      4.30  292.42  0.00712       12.5%     43.53
  WD12:  Seg 43   600-644      5.72  350.96  0.00116       17.5%     44.69
  WD13:  Seg 53   743-779      4.72  309.63  0.00418       20.0%     44.28
  WD14:  Seg 57   782-826      5.50  341.70  0.00154       25.0%     50.18
  WD15:  Seg 61   840-878      3.90  275.74  0.01191       15.0%     24.09

Multiple sequence alignment of 15 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   77-110    ---------------IPL------PLPRDLLSTE------PSA-S------HLLLAVADRHGRVALVD
   WD 2  114-158    -RS----VVV-----WLN------PSSDPKLGIQDLCWVQARH-D------SHVLAAISGSSFLSLYT
   WD 3  161-200    -GG----LFW-----KYD------AGTEILSCLR------RDPYD------SRHFCVLGLKGFLLSVK
   WD 4  237-275    -SS----SSP-----ASA------AFPLYFARFA------FSP-H------WKNILFVTFPRELLVFD
   WD 5  276-319    LQYETPLSTT-----PLP------RGCAKFLDIL------PDP-N------KELLYCGHVDGRLSIWR
   WD 6  323-361    -GE----QVH-----VMC------TMEEFMPSIG------MSI-P------SPSALAVLLSHSDSTMQ
   WD 7  369-407    -DG----TSS-----IDF------DNPFDFYDES------LLV-S------KTTFISLSDDGKIWKWV
   WD 8  409-448    SAE----GVE-----DAL------KNASDLDMGI------GAT-E------AALPGAIQENDSSSLDD
   WD 9  456-494    -NR----SRG-----HTS------GSSMEKSDLS------FKV-G------GWKVFGAYTCLLRSMQI
   WD10  503-548    LSS----TVS-----TLAVPSPSLTATLARGGNI------PAA-A------VPLVALGTQSGTIDVVD
   WD11  552-590    -NA----VAA-----STS------VHTGVVRGLR------WLG-N------SRLVSFSYSQVNDKSRG
   WD12  600-644    LRS----GLNKPFRDLQK------PERTPIRALR------TSS-S------GRYLLILFRDAPVEVWA
   WD13  743-779    -KW----PST-----SFV------PSDGLVTAMA------YRL-P--------HVVMGDRSGNIRWWD
   WD14  782-826    -TG----QSS-----AFN------SHRDGIRRIK------FSP-VVAGDRSRGRVAVLFNDNTFSVFD
   WD15  840-878    -PQ----IPG-----TLV------LELDWLPLRT------DKN-D------PLVLCIAGADSTFRLVE

   WD40 Template    TGE----CLR-----TLS------GHTSGVTSVS------FSP-D------GKRLVSGSEDGTIKVWD