Input parameters:

  Query = AT3G27140.1 (Len=245)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G27140.1, Len=245):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEDRFSTITNLHGDRKQAIFGVYVGHGGVKAAECPAKNLDKNIVEEVVGKRHELEIAEAGGSSCVTALVSEGSLVVSNAG 80  
WD40-rpts                                                                            (_________

Query       81 DCRAVMSVGGVAKGSLVVPRGIGDAQLKKWVIAEPETKISRVEHDHEFLILASHGLWDKVSNQEAVDIARPFCLRTEKPL 160 
WD40-rpts      _________WD 1_________________)                                                 

Query      161 LLAACKKLVDLSASRGSFDDISVMLIPLRPVRIEKRGILEDVSSSKANSIARDIAISVTRDGRFRSYLARGGPGWLLSRI 240 
WD40-rpts                                                                                      

Query      241 EEDKR 245 
WD40-rpts           

1 WD40-repeats found in QUERY=AT3G27140.1 (Len=245):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    71-111      3.16  245.09  0.03057       27.5%     16.96

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-111    EGSLVVSNAGDCRAVMSVGGVAKGSLVVPRGIGDAQLKKWV

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVS-GSEDGTIKVWD