Input parameters:

  Query = AT3G25530.1 (Len=289)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G25530.1, Len=289):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGV 80  
WD40-rpts                                                             (________________________

Query       81 LEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYL 160 
WD40-rpts      ______________WD 1_____________________________________)                        

Query      161 GQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 240 
WD40-rpts                                                                                      

Query      241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFSRE 289 
WD40-rpts                                                       

1 WD40-repeats found in QUERY=AT3G25530.1 (Len=289):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    56-136      3.01  239.20  0.03658       22.5%     23.27

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   56-136    KCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILA

   WD40 Template    TGECLRTLSGH-----------TS-------GVTSVSFSPDG-------------------KRLVSGS----EDGTIKVWD