Input parameters:

  Query = AT3G24880.1 (Len=1957)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G24880.1, Len=1957):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHGSVSGYLLVNAEVDSMGGVIDSGGGIGVKTSPRRTAIEKAQAELRQEYDVREERRRELEFLEKGGNPLDFKFGIATSH 80  
WD40-rpts                                                                       (______________

Query       81 SVQSTSLTDQQAEHFVNSEVKDSFALTASPHGDSVESSGRPGVPTISEPNTADNLLLFDSENKSVEGERNLRHPNRQNRT 160 
WD40-rpts      _______________WD 1____________________________)                                

Query      161 SESERSSKAHTNQNTKETEDSAIFRPYARRNRSKISRDPARSSSTDLVQNRGGLATSISIRRGSVEGKGCIPEAANQKDM 240 
WD40-rpts                                                                                      

Query      241 HTTSVSCPVFANSNGNIVPKNRVSSNSLNTKVDGEPVVRESTAGSKTSLLKDEADISYSKSSAYLPVGESGLAGEKAQLV 320 
WD40-rpts                                                                                      

Query      321 STGGSPKAATIAGQKNSSTQLNGLRDSTVEEESLTNRGATGTNGLESESSHANNVEVNVDNERDLYKVDKLDSDEISMQK 400 
WD40-rpts                                                                                      

Query      401 TLRVEGLLDQTVGEMTKTKIEDETGQSTTIISECIPECEMQMKSVKIENQSHRSTAEMQTKEKSSETEKRLQDGLVVLEN 480 
WD40-rpts                                                                                      

Query      481 DSKVGSILSENPSSTLCSGIPQASVDTSSCTVGNSLLSGTDIEALKHQPSSDAVMLDTVKEDAILEEARIIQAKKKRIAE 560 
WD40-rpts                                                                                      

Query      561 LSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAAAQICHRVALTCQLRFEERNQHRKLKKIASVLSNAILQFW 640 
WD40-rpts                                                                                      

Query      641 SSVEAEVPGELEETSLGIVKETCQESNCLNGRRCLAAGVKEYASRFLKYNNSSISYHSAAPSTPDNMCDPEILDISMVDQ 720 
WD40-rpts                                                                                      

Query      721 LTEASLFYSVPSGAMEVYLKSIESHLTRCEKSGSSMQEEVDTSAYDTAGDIGYNVTAFDEDEGETSTYYLPGAFESSRSF 800 
WD40-rpts                                                                                      

Query      801 NISHKKRKNLMKSHSARSYDLGDDLPYVNNTGGSNSSSLMAKRPDSNINAGSVPTRRVRTASRQRVVSPFGCATTGNLPV 880 
WD40-rpts                                                                                      

Query      881 PSKTDASSGDTSSFQDEYSSLHGGSAVQKGTEVESSVNFEKLLPYDMAETSGRPKKKKKTHQGSAYDQTWHLDPSVHVEQ 960 
WD40-rpts                                                                                      

Query      961 KDHWKKRPENNFDMNGLYGPHSAKKQKTTKQLVENNFDMAIPHTGSIPSPAASQMSNMSNPNKSIKFIGGRDRGRKIKGL 1040
WD40-rpts                                                                                      

Query     1041 KISPGQHGSGNPWSLFEDQALVVLVHDMGPNWELISDAMNSTLKIKCIYRNPTECKDRHKILMDKTAGDGADSAEDSGNS 1120
WD40-rpts                                                                                      

Query     1121 QSYPSTLPGIPKGSARQLFQRLQGPMEEDTLKSHFEKICLIGKKLHYRKTQSVIGVSVVSFVHGIQFSSCTGAGISQSLD 1200
WD40-rpts                                                                                      

Query     1201 IPGLHVSKYSCKSWLGFPENDGRDSKQIVPVHNSQVMALSQVFPNNLNGGVLTPLDVCDASTSGQDVFSLENPGLPMLNQ 1280
WD40-rpts                                                                                      

Query     1281 GTPVLPTSGAHPSTPGSSGVVLSNNLPTTSGLQSASVRDGRFNVPRGSLPLDEQHRLQQFNQTLSGRNLQQPSLSTPAAV 1360
WD40-rpts                                                                                      

Query     1361 SGSDRGHRMVPGGNAMGVSGMNRNTPMSRPGFQGMASSAMPNTGSMLSSGMVEIPNTGNIHSGGGASQGNSMIRPREAVQ 1440
WD40-rpts                                                                                      

Query     1441 HMMRMQAAQGNSPGIPAFSNLSSGFTNQTTPVQAYPGHLSQQHQMSPQSHVLGNSHHPHLQSPSQATGAQQEAFAIRQRQ 1520
WD40-rpts                                                                                      

Query     1521 IHQRYLQQQQQQQQFPASGSMMPHVQQPQGSSVSSSPQNSPQTQPPVSPQPLSMPPVSPSPNINAMAQQKPQKSQLALHG 1600
WD40-rpts                                                                                      

Query     1601 LGRSPQSGTSGVNNQAGKQRQRQLQQSARQHPHQRQPTQGQQLNKQLKGMGRGNMIHQNITVDQSHLNGLTMPQGNQATE 1680
WD40-rpts                                                                                      

Query     1681 KGEIAVPVRPDQQSSVGTTTSTNLQSKPFVSPLSSNHSQQLPKSFPGALPPSPQQQMQLHSDNSIQGQSSPATPCNILST 1760
WD40-rpts                                                                                      

Query     1761 SSPSIAPAVAPSNHQHLLIHQKQRNQVQSTAQRVVQHNHLGNSELSKKSQAERMPRVPQSVTNTTQTVSMGTTKGMPQAS 1840
WD40-rpts                                                                                      

Query     1841 NDLKNIKAVGSTAVPALEPPSCVASVQITASKVVNSSNTDSAGNDPVSTPNQGLAQKHGIKGVTQRQQQSLPSEEKRPKL 1920
WD40-rpts                                                                                      

Query     1921 PEKPTVQNQKHLASEEQPHLEEAQELSSSKPPDTKVE 1957
WD40-rpts                                           

1 WD40-repeats found in QUERY=AT3G24880.1 (Len=1957):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    66-128      3.63  264.64  0.01678       25.0%     -2.58

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   66-128    GGNPLDFKFGIATSHSVQSTSLTDQQAEHFVNSEVKDSFALTASPHGDSVESSGRPGVPTISE

   WD40 Template    TGECLRTLSGHTSGV----TSV-------------------SFSPDGKRLVSGSEDGTIKVWD