Input parameters:

  Query = AT3G22910.1 (Len=1017)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G22910.1, Len=1017):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRRNVSDHAEKKDKVGVEVLLELPKTLSKSNKKWQLALIKLYCSRTLLNCAKHAIRKPGLFPRSLSYTAIDLDHHHGDDH 80  
WD40-rpts                                                                                      

Query       81 FKIDTETLNDLVKNKNQEKLESLGGPNGLVSALKSNTRLGINEEGDEIQRRRSTFGSNTYTRQPSKGLFHFVVEAFKDLT 160 
WD40-rpts                                                                                      

Query      161 ILILLGCATLSLGFGIKEHGLKEGWYDGGSIFVAVFLVVAVSAVSNFRQNRQFDKLSKVSSNIKIDVVRNGRRQEISIFD 240 
WD40-rpts                                                                                      

Query      241 IVVGDIVCLNIGDQVPADGVFVEGHLLHVDESSMTGESDHVEVSLTGNTFLFSGTKIADGFGKMAVTSVGMNTAWGQMMS 320 
WD40-rpts                                                                                      

Query      321 HISRDTNEQTPLQSRLDKLTSSIGKVGLLVAFLVLLVLLIRYFTGTTKDESGNREYNGKTTKSDEIVNAVVKMVAAAVTI 400 
WD40-rpts                                                                                      

Query      401 IVVAIPEGLPLAVTLTLAYSMKRMMKDNAMVRKLSACETMGSATVICTDKTGTLTLNQMKVTDFWFGLESGKASSVSQRV 480 
WD40-rpts                                                                                      

Query      481 VELFHQGVAMNTTGSVFKAKAGTEYEFSGSPTEKAILSWAVEELEMGMEKVIEEHDVVHVEGFNSEKKRSGVLMKKKGVN 560 
WD40-rpts                                                                                      

Query      561 TENNVVHWKGAAEKILAMCSTFCDGSGVVREMKEDDKIQFEKIIQSMAAKSLRCIAFAYSEDNEDNKKLKEEKLSLLGII 640 
WD40-rpts                                                                                      

Query      641 GIKDPCRPGVKKAVEDCQFAGVNIKMITGDNIFTARAIAVECGILTPEDEMNSEAVLEGEKFRNYTQEERLEKVERIKVM 720 
WD40-rpts                         (____________________________WD 1____________________________

Query      721 ARSSPFDKLLMVKCLKELGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVATVLKWGRCVYN 800 
WD40-rpts      )                                                                               

Query      801 NIQKFIQFQLTVNVAALVINFVAAVSAGDVPLTAVQLLWVNLIMDTLGALALATEKPTNDLMKKKPIGRVAPLITNIMWR 880 
WD40-rpts                                                                                      

Query      881 NLLAQAFYQISVLLVLQFRGRSIFNVTEKVKNTLIFNTFVLCQVFNEFNARSLEKKNVFKGLHKNRLFIGIIVVTVVLQV 960 
WD40-rpts                                                                                      

Query      961 VMVEFLKRFADTERLNLGQWGVCIAIAAASWPIGWLVKSVPVPERHFFSYLKWKKRS 1017
WD40-rpts                                                               

1 WD40-repeats found in QUERY=AT3G22910.1 (Len=1017):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 15   660-721      3.43  256.54  0.02152       17.5%     21.32

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  660-721    AGVNIKMITGDNIFTARAIAVECGILTPEDEMNSEAVLEGEKFRNYTQEERLEKVERIKVMA

   WD40 Template    TGECLRTLSGHT----------SGVTSVSFSPDGKRLVSG----SED--------GTIKVWD