Input parameters:

  Query = AT3G20740.1 (Len=369)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G20740.1, Len=369):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKITLGNESIVGSLTPSNKKSYKVTNRIQEGKKPLYAVVFNFLDARFFDVFVTAGGNRITLYNCLGDGAISALQSYADE 80  
WD40-rpts                            (__________________WD 1__________________)   (____________

Query       81 DKEESFYTVSWACGVNGNPYVAAGGVKGIIRVIDVNSETIHKSLVGHGDSVNEIRTQPLKPQLVITASKDESVRLWNVET 160 
WD40-rpts      _________WD 2____________________)   (_________________WD 3_________________)   

Query      161 GICILIFAGAGGHRYEVLSVDFHPSDIYRFASCGMDTTIKIWSMKEFWTYVEKSFTWTDDPSKFPTKFVQFPVFTASIHT 240 
WD40-rpts      (___________________WD 4__________________)              (______________________

Query      241 NYVDCNRWFGDFILSKSVDNEILLWEPQLKENSPGEGASDVLLRYPVPMCDIWFIKFSCDLHLSSVAIGNQEGKVYVWDL 320 
WD40-rpts      WD 5_____________________)            (__________________WD 6_________________)(

Query      321 KSCPPVLITKLSHNQSKSVIRQTAMSVDGSTILACCEDGTIWRWDVITK 369 
WD40-rpts      ____________________WD 7____________________)    

7 WD40-repeats found in QUERY=AT3G20740.1 (Len=369):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    23-64       5.74  351.86  0.00113       10.0%     54.22
  WD 2:  Seg  6    68-114      6.48  382.25  0.00044       17.5%     52.60
  WD 3:  Seg 10   118-157      8.18  452.55  4.9e-05       20.0%     54.79
  WD 4:  Seg 14   161-203      7.62  429.25  0.00010       42.5%     57.83
  WD 5:  Seg 19   218-266      5.90  358.19  0.00093       30.0%     47.32
  WD 6:  Seg 23   279-319      6.79  395.21  0.00029       22.5%     52.53
  WD 7:  Seg 27   320-365      8.13  450.38  5.3e-05       30.0%     50.34

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   23-64     -YK-----------V------TNRIQ---EGKK--------PLYAVVFNF-LD--ARFFDVFVTAGGNRITLYN
   WD 2   68-114    -DG-----------A------ISALQ---SYADEDKEESFYTVSWACGVN-GN--PY---VAAGGVKGIIRVID
   WD 3  118-157    -ET-----------I------HKSLV---GHGD--------SVNEIRTQPLKP--QL---VITASKDESVRLWN
   WD 4  161-203    -GI-----------C------ILIFAGAGGHRY--------EVLSVDFHPSDI--YR---FASCGMDTTIKIWS
   WD 5  218-266    TDDPSKFPTKFVQFP------VFTAS---IHTN--------YVDCNRWF---G--DF---ILSKSVDNEILLWE
   WD 6  279-319    -SD-----------V------LLRYP---VPMC--------DIWFIKFSC-DLHLSS---VAIGNQEGKVYVWD
   WD 7  320-365    LKS-----------CPPVLITKLSHN---QSKS--------VIRQTAMSV-DG--ST---ILACCEDGTIWRWD

   WD40 Template    TGE-----------C------LRTLS---GHTS--------GVTSVSFSP-DG--KR---LVSGSEDGTIKVWD