Input parameters:

  Query = AT3G19590.1 (Len=340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G19590.1, Len=340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTTVTPSAGRELSNPPSDGISNLRFSNNSDHLLVSSWDKRVRLYDVSTNSLKGEFLHGGAVLDCCFHDDFSGFSVGADYK 80  
WD40-rpts               (_______________WD 1_______________)  (________________WD 2____________

Query       81 VRRIVFNVGKEDILGTHDKAVRCVEYSYAAGQVITGSWDKTVKCWDPRGASGPERTQVGTYLQPERVYSMSLVGHRLVVA 160 
WD40-rpts      ____)(__________________WD 3_________________)     (_________________WD 4_______

Query      161 TAGRHVNIYDLRNMSQPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEAAQAKKYAFKCHRKSEAGRDI 240 
WD40-rpts      _________)     (__________________WD 5_________________)      (_________________

Query      241 VYPVNSIAFHPIYGTFATGGCDGFVNIWDGNNKKRLYQYSKYPTSISALSFSRDGQLLAVASSYTFEEGEKSQEPEAIFV 320 
WD40-rpts      ____WD 6____________________)   (_________________WD 7________________)         

Query      321 RSVNEIEVKPKPKVYPNPAA 340 
WD40-rpts                          

7 WD40-repeats found in QUERY=AT3G19590.1 (Len=340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-45       8.07  448.04  5.7e-05       17.5%     50.49
  WD 2:  Seg  4    48-85       5.90  358.20  0.00093       17.5%     53.65
  WD 3:  Seg  8    86-126      8.86  480.55  2.1e-05       30.0%     51.59
  WD 4:  Seg 12   132-170      7.92  441.98  6.9e-05       20.0%     54.56
  WD 5:  Seg 16   176-216      6.05  364.52  0.00076       20.0%     51.62
  WD 6:  Seg 20   223-269      7.21  412.65  0.00017       22.5%     37.61
  WD 7:  Seg 24   273-311      8.11  449.86  5.4e-05       22.5%     48.67

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-45     ------------RELSNPPSDGISNLRFSNNSDHLLVSSWDK--RVRLYD
   WD 2   48-85     -TN-S-------LKGEFLHGGAVLDCCFHDDFSGFSVGA-DY--KVRRIV
   WD 3   86-126    FNVGK-------EDILGTHDKAVRCVEYSYAAGQVITGSWDK--TVKCWD
   WD 4  132-170    -GP-E-------RTQVGTYLQPERVYSMSLVGHRLVVATAGR--HVNIYD
   WD 5  176-216    -QP-E-------QRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFD
   WD 6  223-269    AKK-YAFKCHRKSEAGRDIVYPVNSIAFHPIYGTFATGGCDG--FVNIWD
   WD 7  273-311    -KK-R-------LYQYSKYPTSISALSFSRDGQLLAVASSYT--FEEGEK

   WD40 Template    TGE-C-------LRTLSGHTSGVTSVSFSPDGKRLVSGSEDG--TIKVWD