Input parameters:

  Query = AT3G18780.1 (Len=371)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G18780.1, Len=371):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEADDIQPIVCDNGTGMVKAGFAGDDAPRAVFPSVVGRPRHHGVMVGMNQKDAYVGDEAQSKRGILTLKYPIEHGVVSN 80  
WD40-rpts                                                                                      

Query       81 WDDMEKIWHHTFYNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDG 160 
WD40-rpts                  (____________________________________WD 1___________________________

Query      161 VSHTVPIYEGFSLPHAILRLDLAGRDLTDYLMKILTERGYMFTTTAEREIVRDIKEKLSFVAVDYEQEMETSKTSSSIEK 240 
WD40-rpts      ________)                                                                       

Query      241 NYELPDGQVITIGAERFRCPEVLFQPSFVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFSGIADRMSKEIT 320 
WD40-rpts                                                                                      

Query      321 ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVKIDQILFRILLHAN 371 
WD40-rpts                                                         

1 WD40-repeats found in QUERY=AT3G18780.1 (Len=371):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    93-169      2.79  230.08  0.04827       22.5%     13.40

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   93-169    YNELRIAPEEHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE

   WD40 Template    TGECLRTLSGHTSGVTSVSFSP---------------DGKRL-------------------VSGSEDG---TIKVWD