Input parameters:

  Query = AT3G18140.1 (Len=305)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G18140.1, Len=305):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSQPSVILATASYDHTIRFWEAETGRCYRTIQYPDSHVNRLEITPDKHYLAAACNPHIRLFDVNSNSPQPVMTYDSHTNN 80  
WD40-rpts      (________WD 1_______)   (________________WD 2________________)     (____________

Query       81 VMAVGFQCDAKWMYSGSEDGTVKIWDLRAPGCQKEYESVAAVNTVVLHPNQTELISGDQNGNIRVWDLRANSCSCELVPE 160 
WD40-rpts      _____WD 3________________)  (_________________WD 4________________)   (_________

Query      161 VDTAVRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQTMTEFEPLHKLQAHNGHILKCLLSPANKYLATASSDKTVKIWNV 240 
WD40-rpts      ________WD 5_________________)          (_________________WD 6________________) 

Query      241 DGFKLEKVLTGHQRWVWDCVFSVDGEFLVTASSDMTARLWSMPAGKEVKVYQGHHKATVCCALHD 305 
WD40-rpts        (_________________WD 7________________)                        

7 WD40-repeats found in QUERY=AT3G18140.1 (Len=305):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-21       3.04  240.06  0.03564       17.5%     27.43
  WD 2:  Seg  3    25-62       7.97  444.05  6.4e-05       27.5%     55.52
  WD 3:  Seg  7    68-106     10.33  541.50  3.1e-06       45.0%     53.92
  WD 4:  Seg 11   109-147      8.34  459.27  4.0e-05       27.5%     55.69
  WD 5:  Seg 15   151-190      7.79  436.57  8.1e-05       27.5%     56.09
  WD 6:  Seg 19   201-239      9.65  513.19  7.5e-06       32.5%     51.31
  WD 7:  Seg 23   243-281      9.82  520.19  6.1e-06       35.0%     56.51

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-21     -------------------MSQPSVILATASYDHTIRFWE
   WD 2   25-62     GRCYRTIQYPDS-HVNRLEITPDKHYLAAAC-NPHIRLFD
   WD 3   68-106    PQPVMTYDSHTN-NVMAVGFQCDAKWMYSGSEDGTVKIWD
   WD 4  109-147    APGCQKEYESVA-AVNTVVLHPNQTELISGDQNGNIRVWD
   WD 5  151-190    NSCSCELVPEVDTAVRSLTVMWDGTMVVAANNRGTCYVWR
   WD 6  201-239    FEPLHKLQAHNG-HILKCLLSPANKYLATASSDKTVKIWN
   WD 7  243-281    FKLEKVLTGHQR-WVWDCVFSVDGEFLVTASSDMTARLWS

   WD40 Template    GECLRTLSGHTS-GVTSVSFSPDGKRLVSGSEDGTIKVWD