Input parameters:

  Query = AT3G18130.1 (Len=326)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G18130.1, Len=326):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAEGLVLKGIMRAHTDIVTAIATPIDNSDIIVTASRDKSIILWKLTKDDKSYGVAQRRLTGHSHFVEDVVLSSDGQFALS 80  
WD40-rpts      (___________________WD 1___________________)        (_________________WD 2______

Query       81 GSWDGELRLWDLATGETTRRFVGHTKDVLSVAFSTDNRQIVSASRDRTIKLWNTLGECKYTISEGDGHKEWVSCVRFSPN 160 
WD40-rpts      __________)   (_________________WD 3________________)     (__________________WD 

Query      161 TLVPTIVSASWDKTVKVWNLQNCKLRNSLVGHSGYLNTVAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLEAGSIIHSL 240 
WD40-rpts      4_________________)   (_________________WD 5________________)   (_______________

Query      241 CFSPNRYWLCAATENSIRIWDLESKSVVEDLKVDLKSEAEKNEGGVGTGNQKKVIYCTSLNWSADGSTLFSGYTDGVVRV 320 
WD40-rpts      _WD 6_______________)                      (_________________WD 7_______________

Query      321 WGIGRY 326 
WD40-rpts      _)    

7 WD40-repeats found in QUERY=AT3G18130.1 (Len=326):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-44       7.60  428.73  0.00010       27.5%     51.89
  WD 2:  Seg  5    53-91      10.02  528.42  4.7e-06       42.5%     54.00
  WD 3:  Seg  9    95-133     10.90  565.11  1.5e-06       50.0%     55.93
  WD 4:  Seg 13   139-179      8.33  458.83  4.1e-05       37.5%     48.46
  WD 5:  Seg 17   183-221     10.19  535.73  3.7e-06       37.5%     52.90
  WD 6:  Seg 21   225-261      6.62  388.09  0.00037       30.0%     53.18
  WD 7:  Seg 25   284-322      7.59  428.10  0.00011       32.5%     42.56

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-44     MAEGLVLKGIMRAHTDIVTAIATPIDN-SDIIVTASRDKSIILWK
   WD 2   53-91     -GV---AQRRLTGHSHFVEDVVLSSDG--QFALSGSWDGELRLWD
   WD 3   95-133    -GE---TTRRFVGHTKDVLSVAFSTDN--RQIVSASRDRTIKLWN
   WD 4  139-179    -KY---TISEGDGHKEWVSCVRFSPNTLVPTIVSASWDKTVKVWN
   WD 5  183-221    -CK---LRNSLVGHSGYLNTVAVSPDG--SLCASGGKDGVILLWD
   WD 6  225-261    -GK---KLYSLEAG-SIIHSLCFSPNR--YWLCAAT-ENSIRIWD
   WD 7  284-322    -GG---VGTGNQKKVIYCTSLNWSADG--STLFSGYTDGVVRVWG

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPDG--KRLVSGSEDGTIKVWD