Input parameters:

  Query = AT3G16650.1 (Len=479)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G16650.1, Len=479):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTMIALNREVETQSLKKLSLKSVRRAREIFSPVHGQFPQPDPESKRIRLCHKIQVAFGGVEPASKPTRIADHNSEKTAPL 80  
WD40-rpts                                               (__________________WD 1________________

Query       81 KALALPGPKGSKELRKSATEKALVVGPTLPPRDLNNTGNPGKSTAILPAPGSFSERNLSTAALMERMPSRWPRPEWHAPW 160 
WD40-rpts      _)                         (____________________WD 2___________________)       (

Query      161 KNYRVLQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIGQVRGLAVSNRHTYMFSAGDDKQVKCWD 240 
WD40-rpts      _________________WD 3________________)   (_________________WD 4________________)

Query      241 LEQNKVIRSYHGHLHGVYCLALHPTLDVVLTGGRDSVCRVWDIRTKMQIFVLPHDSDVFSVLARPTDPQVITGSHDSTIK 320 
WD40-rpts         (_________________WD 5________________)(__________________WD 6_______________

Query      321 FWDLRYGKSMATITNHKKTVRAMALHPKENDFVSASADNIKKFSLPKGEFCHNMLSLQRDIINAVAVNEDGVMVTGGDKG 400 
WD40-rpts      __)   (_________________WD 7________________)   (________________WD 8___________

Query      401 GLWFWDWKSGHNFQRAETIVQPGSLESEAGIYAACYDQTGSRLVTCEGDKTIKMWKEDEDATPETHPLNFKPPKEIRRF 479 
WD40-rpts      _____)           (_________________WD 9________________)                       

9 WD40-repeats found in QUERY=AT3G16650.1 (Len=479):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    42-82       3.05  240.78  0.03487        7.5%      1.97
  WD 2:  Seg  3   108-152      3.05  240.47  0.03519       12.5%     -3.27
  WD 3:  Seg  4   160-198      9.40  502.89  1.0e-05       42.5%     53.98
  WD 4:  Seg  8   202-240      9.57  509.94  8.3e-06       30.0%     56.51
  WD 5:  Seg 12   244-282      9.65  513.32  7.5e-06       27.5%     55.58
  WD 6:  Seg 16   283-323      8.63  471.24  2.8e-05       35.0%     50.89
  WD 7:  Seg 20   327-365      8.79  477.59  2.3e-05       25.0%     52.41
  WD 8:  Seg 24   369-406      7.69  432.24  9.3e-05       27.5%     51.27
  WD 9:  Seg 29   418-456      8.00  444.95  6.3e-05       25.0%     38.31

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   42-82     ------------PESKRIRLCHKIQVAFGGVEPASKPTRIADHNSE------KTAPLKA
   WD 2  108-152    -TLPPRDLN-NT------------GNPGKSTAILPAPGSFSERNLSTAALMERMPSRWP
   WD 3  160-198    -WKNYRVLQ-GH------------LGWVRSVAFDPSNEWFCTGSAD------RTIKIWD
   WD 4  202-240    -GVLKLTLT-GH------------IGQVRGLAVSNRHTYMFSAGDD------KQVKCWD
   WD 5  244-282    -NKVIRSYH-GH------------LHGVYCLALHPTLDVVLTGGRD------SVCRVWD
   WD 6  283-323    IRTKMQIFVLPH------------DSDVFSVLARPTDPQVITGSHD------STIKFWD
   WD 7  327-365    -GKSMATIT-NH------------KKTVRAMALHPKENDFVSASAD------NIKKFSL
   WD 8  369-406    -EFCHNMLS-LQ------------RDIINAVAVNEDGV-MVTGGDK------GGLWFWD
   WD 9  418-456    -TIVQPGSL-ES------------EAGIYAACYDQTGSRLVTCEGD------KTIKMWK

   WD40 Template    TGECLRTLS-GH------------TSGVTSVSFSPDGKRLVSGSED------GTIKVWD