Input parameters:

  Query = AT3G15610.1 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G15610.1, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEKKKVATPLVCHGHSRPVVDLFYSPITPDGFFLISASKDSQPMLRNGETGDWIGTFEGHKGAVWSSCLDNNALRAASAS 80  
WD40-rpts          (___________________WD 1__________________)   (_________________WD 2________

Query       81 ADFSAKLWDALTGDVLHSFEHKHIVRACAFSQDTKYLITGGFEKILRVFDLNRLDAPPTEIDKSPGSIRTLTWLHGDQTI 160 
WD40-rpts      ________)   (________________WD 3________________)(___________________WD 4______

Query      161 LSSCTDIGGVRLWDVRSGKIVQTLETKSPVTSAEVSQDGRYITTADGSTVKFWDANHFGLVKSYDMPCNIESASLEPKSG 240 
WD40-rpts      _____________)   (________________WD 5_______________)   (_________________WD 6_

Query      241 NKFVAGGEDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIWQTGPVNPEEISESKPKQSVDEVA 320 
WD40-rpts      _______________)   (_________________WD 7________________)                      

Query      321 RKIEGFHINKEGKTAEKPSDA 341 
WD40-rpts                           

7 WD40-repeats found in QUERY=AT3G15610.1 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     5-47       7.97  443.82  6.5e-05       27.5%     51.92
  WD 2:  Seg  5    51-89       9.70  515.49  7.0e-06       32.5%     53.50
  WD 3:  Seg  9    93-130      8.04  446.85  5.9e-05       30.0%     54.48
  WD 4:  Seg 13   131-174      6.52  384.08  0.00041       12.5%     48.56
  WD 5:  Seg 17   178-214      7.09  407.46  0.00020       35.0%     52.79
  WD 6:  Seg 21   218-256      6.66  389.85  0.00035       22.5%     53.67
  WD 7:  Seg 25   260-298     10.33  541.56  3.1e-06       42.5%     54.75

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    5-47     KVA---TPLVCHGHSRPVVDLFYSPITPDGFF-LISASKDSQPMLRN
   WD 2   51-89     -GD---WIGTFEGHKGAVWSSCLDN---NALR-AASASADFSAKLWD
   WD 3   93-130    -GD---VLHSF-EHKHIVRACAFSQ---DTKY-LITGGFEKILRVFD
   WD 4  131-174    LNRLDAPPTEIDKSPGSIRTLTWLH---GDQTILSSCTDIGGVRLWD
   WD 5  178-214    -GK---IVQTLETK-SPVTSAEVSQ---DGRY-ITTAD-GSTVKFWD
   WD 6  218-256    -FG---LVKSYDMPCN-IESASLEP--KSGNK-FVAGGEDMWVRLFD
   WD 7  260-298    -GK---EIGCNKGHHGPVHCVRFAP---TGES-YASGSEDGTIRIWQ

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSP---DGKR-LVSGSEDGTIKVWD