Input parameters:

  Query = AT3G14415.3 (Len=367)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G14415.3, Len=367):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEITNVTEYDAIAKAKLPKMVYDYYASGAEDQWTLQENRNAFARILFRPRILIDVNKIDMATTVLGFKISMPIMVAPTAF 80  
WD40-rpts                                                                                      

Query       81 QKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVASTGPGIRFFQLYVYKNRKVVEQLVRRAEKAGFKAIALTVDTPR 160 
WD40-rpts                                                                                      

Query      161 LGRRESDIKNRFTLPPNLTLKNFEGLDLGKMDEANDSGLASYVAGQIDRTLSWKDIQWLQTITNMPILVKGVLTGEDARI 240 
WD40-rpts                                                                    (_________________

Query      241 AIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFALAAEGE 320 
WD40-rpts      ___________WD 1____________________________)                                    

Query      321 AGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWDTPRHLPRL 367 
WD40-rpts                                                     

1 WD40-repeats found in QUERY=AT3G14415.3 (Len=367):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   223-284      2.79  229.90  0.04852       20.0%     23.21

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  223-284    TNMPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRVPVFL

   WD40 Template    TGECLRTLSGHT---------SGVTSVSFSPDGKRLVSGSED-------------GTIKVWD