Input parameters:

  Query = AT3G14130.1 (Len=363)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G14130.1, Len=363):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDQIVNVDEFQELAKQALPKMYYDFYNGGAEDQHTLNENVQAFRRIMFRPRVLVDVSNIDMSTSMLGYPISAPIMIAPTA 80  
WD40-rpts                                                                                      

Query       81 MHKLAHPKGEIATAKAAAACNTIMIVSFMSTCTIEEVASSCNAVRFLQIYVYKRRDVTAQIVKRAEKAGFKAIVLTVDVP 160 
WD40-rpts                                                                                      

Query      161 RLGRREADIKNKMISPQLKNFEGLVSTEVRPNEGSGVEAFASSAFDASLSWKDIEWLRSITKLPILVKGLLTREDALKAV 240 
WD40-rpts                                                                 (____________________

Query      241 EAGVDGIVVSNHGARQLDYSPATITVLEEVVHAVKGRIPVLLDGGVRRGTDVFKALALGAQAVLIGRPIVYGLAAKGEDG 320 
WD40-rpts      _________________WD 1_____________________________________)                     

Query      321 VKKVIDMLKNEFEITMALSGCPTIDDVTRNHVRTENERIKSML 363 
WD40-rpts                                                 

1 WD40-repeats found in QUERY=AT3G14130.1 (Len=363):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   220-299      3.54  261.04  0.01874       22.5%      8.29

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  220-299    ITKLPILVKGLLTREDALKAVEAGVDGIVVSNHGARQLDYSPATITVLEEVVHAVKGRIPVLLDGGVRRGTDVFKALALG

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSPDGKRLVSGSE---------------------DGTIKVW---------D