Input parameters:

  Query = AT3G14075.2 (Len=642)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G14075.2, Len=642):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATATMATAAGAAALLYYTLNRKLIAGPSDVDDENSEASASRPSLRIDRVSHRLIQAPATWLETISTLSETLRFTYSETL 80  
WD40-rpts                                                                                      

Query       81 GKWPIGDLAFGINFLIKRQGLLHVDRVFGGKDSVELRGSEVATELKYLLHLLTLCWHFSKKSFPFFLEETGFTKENVLIH 160 
WD40-rpts                                                                                      

Query      161 EPKAGILKPAFTVLVDHNTKYFLLLIRGTHSIKDTLTAATGAIVPFHHTVVNERGVSNLVLGYAHCGMVAAARCIAKLAT 240 
WD40-rpts                                                                                      

Query      241 PCLLKGLEQYPDYKIKIVGHSLGGGTAALLTYIMREQKMLSTATCVTFAPAACMTWELADSGNDFIVSVINGADLVPTFS 320 
WD40-rpts               (____________________________________________WD 1______________________

Query      321 AAAVDDLRAEVTASAWLNDLRNQIEHTRILSTVYRSATALGSRLPSMATAKAKVAGAGAMLRPVSSGTQVVMRRAQSMLT 400 
WD40-rpts      _____________________)                                                          

Query      401 RPALSISSWSCMGPRRRASATQSISEHQLDTSEAMSQDIPETSDPLLVTDEEITGKWKSEAECSNYEETSPRLGATDLDE 480 
WD40-rpts                                                                                      

Query      481 CEDPAEMDTREERMTEAELWQQLEHDLYHDSSEQPEETDVAKEIKEEEEAVIAEAGVAPPESQTAEMKESRRFLPAGKIM 560 
WD40-rpts                                                                                      

Query      561 HIVTVRPEAVEPNEEEDEDGSALERPETVETVEEGRVGIFLTPRSLYSKVRLSQRMISDHFMPVYRRQIERLIQELTVEQ 640 
WD40-rpts                                                                                      

Query      641 HP 642 
WD40-rpts        

1 WD40-repeats found in QUERY=AT3G14075.2 (Len=642):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   250-342      3.47  257.96  0.02060       25.0%     27.26

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  250-342    YPDYKIKIVGHSLGGGTAALLTYIMREQKMLSTATCVTFAPAACMTWELADSGNDFIVSVINGADLVPTFSAAAVDDLRAEVTASAWLNDLRN

   WD40 Template    TGECLRTLSGHT-------------------SGVTSVSFSPDGKRL-------------VSGSEDGTIKVW------------------D---