Input parameters:

  Query = AT3G14075.1 (Len=642)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G14075.1, Len=642):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATATMATAAGAAALLYYTLNRKLIAGPSDVDDENSEASASRPSLRIDRVSHRLIQAPATWLETISTLSETLRFTYSETL 80  
WD40-rpts                                                                                      

Query       81 GKWPIGDLAFGINFLIKRQGLLHVDRVFGGKDSVELRGSEVATELKYLLHLLTLCWHFSKKSFPFFLEETGFTKENVLIH 160 
WD40-rpts                                                                                      

Query      161 EPKAGILKPAFTVLVDHNTKYFLLLIRGTHSIKDTLTAATGAIVPFHHTVVNERGVSNLVLGYAHCGMVAAARCIAKLAT 240 
WD40-rpts                                                                                      

Query      241 PCLLKGLEQYPDYKIKIVGHSLGGGTAALLTYIMREQKMLSTATCVTFAPAACMTWELADSGNDFIVSVINGADLVPTFS 320 
WD40-rpts               (_____________________________________________WD 1_____________________

Query      321 AAAVDDLRAEVTASAWLNDLRNQIEHTRILSTVYRSATALGSRLPSMATAKAKVAGAGAMLRPVSSGTQVVMRRAQSMLT 400 
WD40-rpts      ________________________)                                                       

Query      401 RPALSISSWSCMGPRRRASATQSISEHQLDTSEAMSQDIPETSDPLLVTDEEITGKWKSEAECSNYEETSPRLGATDLDE 480 
WD40-rpts                                                                                      

Query      481 CEDPAEMDTREERMTEAELWQQLEHDLYHDSSEQPEETDVAKEIKEEEEAVIAEAGVAPPESQTAEMKESRRFLPAGKIM 560 
WD40-rpts                                                                                      

Query      561 HIVTVRPEAVEPNEEEDEDGSALERPETVETVEEGRVGIFLTPRSLYSKVRLSQRMISDHFMPVYRRQIERLIQELTVEQ 640 
WD40-rpts                                                                                      

Query      641 HP 642 
WD40-rpts        

1 WD40-repeats found in QUERY=AT3G14075.1 (Len=642):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   250-345      3.01  238.89  0.03693       22.5%     26.07

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  250-345    YPDYKIKIVGHSLGGGTAALLTYIMREQKMLSTATCVTFAPAACMTWELADSGNDFIVSVINGADLVPTFSAAAVDDLRAEVTASAWLNDLRNQIE

   WD40 Template    TGECLRTLSGHT-------------------SGVTSVSFSPDGKRL-------------VSGSEDGTIKVW------------------------D