Input parameters:

  Query = AT3G13900.1 (Len=1243)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G13900.1, Len=1243):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGRRRIRSRIRKSHFYTFKCLRPKTLEDQGPHIINGPGYTRIVHCNQPHLHLAKVLRYTSNYVSTTRYNLITFLPKCLYE 80  
WD40-rpts                                                                                      

Query       81 QFHRVANFYFLVAAILSVFPLSPFNKWSMIAPLIFVVGLSMGKEALEDWRRFMQDVKVNSRKATVHRGDGDFGRRKWKKL 160 
WD40-rpts                                                                                      

Query      161 RVGDVVKVEKDQFFPADLLLLSSSYEDGICYVETMNLDGETNLKVKRCLDVTLPLERDDTFQSFSGTIKCEDPNPNLYTF 240 
WD40-rpts                                                                                      

Query      241 VGNLEYDGQVYPLDPSQILLRDSKLRNTSYVYGVVVFTGHDTKVMQNSTKSPSKRSRIEKRMDYIIYTLFALLVLVSFIS 320 
WD40-rpts                                                                                      

Query      321 SLGFAVMTKMHMGDWWYLRPDKPERLTNPRNPFHAWVVHLITAVLLYGYLIPISLYVSIELVKVLQATFINQDLQMYDSE 400 
WD40-rpts                                                                                      

Query      401 SGTPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTSYGVRASEVELAAAKQMAIDLDEEQGEEVTHLPRT 480 
WD40-rpts                                                                                      

Query      481 RGRMHGYAKMPSKTSSDIELETVITATDEGDQTQSTGIKGFSFEDQRLMGGNWLNEPNSDDILMFLRILAVCHTAIPEVD 560 
WD40-rpts                                                                                      

Query      561 EDTGKCTYEAESPDEVAFLVAAGEFGFEFTKRTQSSVFISERHSGQPVEREYKVLNVLDFTSKRKRMSVIVRDEKGQILL 640 
WD40-rpts                                                                               (______

Query      641 LCKGADSIIFERLSKNGKNYLEATSKHLNGYGEAGLRTLALSYRKLDETEYSIWNSEFHKAKTSVGADRDEMLEKVSDMM 720 
WD40-rpts      _____________________________________________________WD 1_______________________

Query      721 EKELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKQIYIALRNEEGSSQDPEAAA 800 
WD40-rpts      ___________________________________)                                            

Query      801 RENILMQIINASQMIKLEKDPHAAFALIIDGKTLTYALEDDIKYQFLALAVDCASVICCRVSPKQKALVTRLAKEGTGKT 880 
WD40-rpts                                                                                      

Query      881 TLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNITFGLTLFY 960 
WD40-rpts                                                                                      

Query      961 FEAFTGFSGQAIYNDSYLLLFNVILTSLPVIALGVFEQDVSSEVCLQFPALYQQGPKNLFFDWYRIIGWMANGVYASVVI 1040
WD40-rpts                                                                                      

Query     1041 FSLNIGIFHVQSFCSGGQTADMDAMGTAMFTCIIWAVNVQIALTMSHFTWIQHVLIWGSIVTWYIFLALFGMLPPKVSGN 1120
WD40-rpts                                                                                      

Query     1121 IFHMLSETLAPAPIFWLTSLLVIAATTLPYLAYISFQRSLNPLDHHIIQEIKHFRIDVQDECMWTRERSKAREKTKIGVT 1200
WD40-rpts                                                                                      

Query     1201 ARVDAKIRQLRGRLQRKHSILSVMSGLSGVSASTDTTSTTQHS 1243
WD40-rpts                                                 

1 WD40-repeats found in QUERY=AT3G13900.1 (Len=1243):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 24   634-756      3.21  247.12  0.02873       17.5%     37.96

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  634-756    EKGQILLLCKGADSIIFERLSKNGKNYLEATSKHLNGYGEAGLRTLALSYRKLDETEYSIWNSEFHKAKTSVGADRDEMLEKVSDMMEKELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWV

   WD40 Template    TGECLRTLSGHT----------SG-------------------------VTSVS-----------------FSPD-------------GKRLVSGS-------EDG-----------TIKVWD