Input parameters:

  Query = AT3G13340.2 (Len=447)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G13340.2, Len=447):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSNYRGDDAEYMEDVDDEMEDVEDDMDEEFRGDDLGASDSDVEEFDYSNNKVADTTAEQARKGKDIQGIPWDRLNISREK 80  
WD40-rpts                                                                                      

Query       81 YRQTRLEQYKNYENVPNSGESSEKVCKVTQKGGLFYDFWRNSRSIKSTILHFQLRNLVWATSKHDVYLMSNFLVTHYSSL 160 
WD40-rpts                                     (_________________WD 1________________)          

Query      161 TSGKHEVLNVRGHVAPSEKHPGSLLEGFTQTQVSTLAVKDDFLVAGGFQGELICKHLDRPGVSFCSRMTYDDNAITNAIE 240 
WD40-rpts                (_____________________WD 2____________________)       (_______________

Query      241 IYNKPSGALHFTASNNDCGVRDFDMERYQLVKHFRFPWPVNHASLSPDGKLLAIVGDNPEGLIVDPNTGKTLETLSGHLD 320 
WD40-rpts      __WD 3_________________)(__________________WD 4_________________)   (___________

Query      321 FSFASAWHPDGVTFSTGNQDKTCRVWDIRNLSQSVTVLKGNLGAIRSIRYTSDGKYMAMAEPADFVHVYDVSNGYETEQE 400 
WD40-rpts      ______WD 5________________)    (_________________WD 6________________)   (______

Query      401 IDFFGEISGISFSPDTEALFIGVWDRTYGSLLEFGRRRNYSYLDSYL 447 
WD40-rpts      _________________WD 7______________________)   

7 WD40-repeats found in QUERY=AT3G13340.2 (Len=447):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1   112-150      7.06  406.16  0.00021       10.0%     46.00
  WD 2:  Seg  7   171-217      5.56  344.38  0.00142       20.0%     45.20
  WD 3:  Seg 11   225-264      4.84  314.49  0.00359       10.0%     44.88
  WD 4:  Seg 15   265-305      7.31  416.49  0.00015       25.0%     57.39
  WD 5:  Seg 19   309-347     10.35  542.30  3.0e-06       40.0%     53.14
  WD 6:  Seg 23   352-390      8.87  481.21  2.0e-05       20.0%     55.49
  WD 7:  Seg 27   394-444      7.12  408.98  0.00019       27.5%     52.67

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  112-150    -GG-LF-------YDFWRNSRSIKSTILHFQLR-NLVWATSKHD------------VYLMS
   WD 2  171-217    RGH-VAPSEKHPGSLLEGFTQTQVSTLAVKDDF-LVAGGFQGEL------------ICKHL
   WD 3  225-264    -CS-RM-------TYDDNAITNAIEIYNKPSGALHFTASNNDCG------------VRDFD
   WD 4  265-305    MERYQL-------VKHFRFPWPVNHASLSPDGK-LLAIVGDNPE------------GLIVD
   WD 5  309-347    -GK-TL-------ETLSGHLDFSFASAWHPDGV-TFSTGNQDKT------------CRVWD
   WD 6  352-390    -SQ-SV-------TVLKGNLGAIRSIRYTSDGK-YMAMAEPADF------------VHVYD
   WD 7  394-444    -GY-ET-------EQEIDFFGEISGISFSPDTE-ALFIGVWDRTYGSLLEFGRRRNYSYLD

   WD40 Template    TGE-CL-------RTLSGHTSGVTSVSFSPDGK-RLVSGSEDGT------------IKVWD