Input parameters:

  Query = AT3G13300.2 (Len=1309)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G13300.2, Len=1309):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSPGPFLHNQYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATNLHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNN 80  
WD40-rpts                                                                                      

Query       81 TNNGAPVANQEPSHQLPVVNHNEIARSFPGGSGPIRVPSCKLPKGRRLIGEHAVYDVDVRLQGEIQPQLEVTPITKYGSD 160 
WD40-rpts                                                                                 (____

Query      161 PQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRVTDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGED 240 
WD40-rpts      __________WD 1______________)(__________________WD 2__________________)         

Query      241 QPQITGKIVLALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKH 320 
WD40-rpts                                                             (________________________

Query      321 DGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDGHPVSSATFVTSPERPDHIILITGGPLNREMKIWVS 400 
WD40-rpts      _WD 3________________________)   (____________________WD 4____________________) 

Query      401 AGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEAGLLLLANAKRNALYAVHLDYGSSPVGTRMDYLSEF 480 
WD40-rpts                                                                                      

Query      481 TVTMPILSFIGTNDPPEEPIVKVYCVQTLAIQQYTLDLCLCLPPPIENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLP 560 
WD40-rpts                                                                                      

Query      561 SVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGLPSQTSGAGSAYATLPQLPLSPRLSSKLSGYHTPVE 640 
WD40-rpts                                                                                      

Query      641 AIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRSKDSNVTPDDDVSGMRSPSAFFKHPTHLVTPSEILM 720 
WD40-rpts                                                                                      

Query      721 GVSSAEASITTEDRRDRDANIQDVNNDPRDTEVEVKEISEARSTQNGEINDHDETENCTSENREKVFCSQVSNLSTEMAR 800 
WD40-rpts                                                                                      

Query      801 DCYPSTEGTFIPGESKAYGQPIKAGDESGVDSRGGPAKLLKGKKQKAKNSQGPGLSSTSSNVANLADSFNEQSQSLSHPM 880 
WD40-rpts                                                                                      

Query      881 TDLLPQLLAMQETMNQVMASQKEMQRQLSNAATGPIGKESKRLEVALGRMIEKSSKSNADALWARIQEETVKNEKALRDH 960 
WD40-rpts                                                                                      

Query      961 AQQIVNATTNFMSKELNAMFEKTIKKELAAIGPALARSVVPVIEKTVSSAITESFQRGIGDKAVNQLDKSVNIKLEATVA 1040
WD40-rpts                                                                                      

Query     1041 RQIQAQFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQIDSAFQKGIAEHTNAAQQRFDSGHSQLAHTLKESITSAS 1120
WD40-rpts                                                                                      

Query     1121 SVAQALSRELAETQRNLLALAAAGANSGGSNSLVTQLSGGPLGALLEKVEAPMDPTTELSRLISERKYEESFTSALQRSD 1200
WD40-rpts                                                                                      

Query     1201 VSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTSRKLAWMTDVVAAINPSDQMIAVHARPIFEQVYQIL 1280
WD40-rpts                                                                                      

Query     1281 HHHRNAPGSDVSAIRLIMHVINSMLMGCK 1309
WD40-rpts                                   

4 WD40-repeats found in QUERY=AT3G13300.2 (Len=1309):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   156-189      3.66  265.66  0.01625       12.5%     43.17
  WD 2:  Seg  8   190-231      6.44  380.74  0.00046       37.5%     49.20
  WD 3:  Seg 16   296-350      6.47  381.75  0.00045       37.5%     51.19
  WD 4:  Seg 20   354-399      3.38  254.35  0.02302       30.0%     52.42

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  156-189    --------------------K-YGSDPQ-LVVGRQI-----AV-NK-VYICYG-LKGGNIRVLN
   WD 2  190-231    IN--------------TALRSLFRGHSQ-RVTDMAF-----FAEDV-DMLASV-SLDGKVFVWK
   WD 3  296-350    VFSAEAPLQCPLDKLIDGVQI-VGKHDG-EVTDLSM-----CQ-WMTTRLVSS-SVDGTIKIWQ
   WD 4  354-399    -A--------------QPLVV-LRPHDGHPVSSATFVTSPERP-DH-IILITGGPLNREMKIWV

   WD40 Template    TG--------------ECLRT-LSGHTS-GVTSVSF-----SP-DG-KRLVSG-SEDGTIKVWD