Input parameters:

  Query = AT3G13300.1 (Len=1344)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G13300.1, Len=1344):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSPGNTNPHNTPPFDLGILFKPSSNPYPPPAASYPPPTGPFLHNQYDQQHYAPPGISAQPSPVTQQQQDVSSSSAATN 80  
WD40-rpts                                                                                      

Query       81 LHPQRTLSYPTPPLNLQSPRSNHNPGTHILALLNNTNNGAPVANQEPSHQLPVVNHNEIARSFPGGSGPIRVPSCKLPKG 160 
WD40-rpts                                                                                      

Query      161 RRLIGEHAVYDVDVRLQGEIQPQLEVTPITKYGSDPQLVVGRQIAVNKVYICYGLKGGNIRVLNINTALRSLFRGHSQRV 240 
WD40-rpts                                                             (_______________________W

Query      241 TDMAFFAEDVDMLASVSLDGKVFVWKISEGSEGEDQPQITGKIVLALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLR 320 
WD40-rpts      D 1______________________)                                                      

Query      321 IDTTKVGRGEVFSAEAPLQCPLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTIKIWQDRKAQPLVVLRPHDG 400 
WD40-rpts         (____________________________WD 2____________________________)   (___________

Query      401 HPVSSATFVTSPERPDHIILITGGPLNREMKIWVSAGEEGWLLPADAESWRCTQTLDLKSSTEPRAEEAFFNQVIALSEA 480 
WD40-rpts      _________WD 3____________________)                                              

Query      481 GLLLLANAKRNALYAVHLDYGSSPVGTRMDYLSEFTVTMPILSFIGTNDPPEEPIVKVYCVQTLAIQQYTLDLCLCLPPP 560 
WD40-rpts                                                                                      

Query      561 IENMGLEKSDSSVSREANLVEGMSEPSGLKPTDLPSVDSVPKPSIIVNRSESANKLSFPSAEATSQAIVPPNGEPKTSGL 640 
WD40-rpts                                                                                      

Query      641 PSQTSGAGSAYATLPQLPLSPRLSSKLSGYHTPVEAIEPVIPHHELGGKTPSADYSVDRQMDAVGERNLDVSSVEEISRS 720 
WD40-rpts                                                                                      

Query      721 KDSNVTPDDDVSGMRSPSAFFKHPTHLVTPSEILMGVSSAEASITTEDRRDRDANIQDVNNDPRDTEVEVKEISEARSTQ 800 
WD40-rpts                                                                                      

Query      801 NGEINDHDETENCTSENREKVFCSQVSNLSTEMARDCYPSTEGTFIPGESKAYGQPIKAGDESGVDSRGGPAKLLKGKKQ 880 
WD40-rpts                                                                                      

Query      881 KAKNSQGPGLSSTSSNVANLADSFNEQSQSLSHPMTDLLPQLLAMQETMNQVMASQKEMQRQLSNAATGPIGKESKRLEV 960 
WD40-rpts                                                                                      

Query      961 ALGRMIEKSSKSNADALWARIQEETVKNEKALRDHAQQIVNATTNFMSKELNAMFEKTIKKELAAIGPALARSVVPVIEK 1040
WD40-rpts                                                                                      

Query     1041 TVSSAITESFQRGIGDKAVNQLDKSVNIKLEATVARQIQAQFQTSGKQALQEGLRSSVESSVIPSFEKACKAMFDQIDSA 1120
WD40-rpts                                                                                      

Query     1121 FQKGIAEHTNAAQQRFDSGHSQLAHTLKESITSASSVAQALSRELAETQRNLLALAAAGANSGGSNSLVTQLSGGPLGAL 1200
WD40-rpts                                                                                      

Query     1201 LEKVEAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISKDTS 1280
WD40-rpts                                                                                      

Query     1281 RKLAWMTDVVAAINPSDQMIAVHARPIFEQVYQILHHHRNAPGSDVSAIRLIMHVINSMLMGCK 1344
WD40-rpts                                                                      

3 WD40-repeats found in QUERY=AT3G13300.1 (Len=1344):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   216-266      5.88  357.39  0.00095       37.5%     54.93
  WD 2:  Seg 14   324-385      5.80  354.07  0.00105       40.0%     51.89
  WD 3:  Seg 18   389-434      2.93  235.80  0.04058       30.0%     47.41

Multiple sequence alignment of 3 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  216-266    KG---------------------GNIRVLNINTALRSLFRGHSQ-RVTDMAF-----FAEDV-DMLASV-SLDGKVFVWK
   WD 2  324-385    TKVGRGEVFSAEAPLQCPLDKLIDGVQ----------IVGKHDG-EVTDLSM-----CQ-WMTTRLVSS-SVDGTIKIWQ
   WD 3  389-434    -A---------------------QPLV----------VLRPHDGHPVSSATFVTSPERP-DH-IILITGGPLNREMKIWV

   WD40 Template    TG---------------------ECLR----------TLSGHTS-GVTSVSF-----SP-DG-KRLVSG-SEDGTIKVWD