Input parameters:

  Query = AT3G13290.1 (Len=1340)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G13290.1, Len=1340):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASSPGNTNPHNPPPFDLGTIFKPSSNPYPPPTGPFLNNQYNQQLYAPPGIAAQPSPVNQTQQDVSSSSSATNLQPQRTL 80  
WD40-rpts                                                                                      

Query       81 SYPTPPLNPQSPRVNHNPGTHILALLNNGGAVANQEPSHHNEIARAFPGGSGPIHVPSGKMPKGRRLVGEHAVYDVDVRL 160 
WD40-rpts                                                                                      

Query      161 QGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKVYICYGLKGGSIRVLNINTALRSLFRGHSQRVTDMAFFAEDVHLLASV 240 
WD40-rpts                 (________________WD 1_______________)(__________________WD 2_________

Query      241 SLDGKVFVWKISEGSEGDEQSQITGKIVVALQILGEEDTKHPRVCWHCHKQEILVVSIGKHVLRIDTTKVGRGEVFSAEA 320 
WD40-rpts      _________)                                                                  (___

Query      321 PLQCHLDKLIDGVQIVGKHDGEVTDLSMCQWMTTRLVSSSVDGTVKIWQDRKTQPLVVLRPHDGLPVNSAIFVTSPERPD 400 
WD40-rpts      _____________________WD 3_______________________)   (____________________WD 4___

Query      401 HIILITGGPLNREIKIWVSAGEEGWLLPADTESWRCTQTLDLKSSTEPQAEKAFFNQVIALSEAGLLLLANARRNAIYSV 480 
WD40-rpts      _________________)                                                              

Query      481 HLDYGSSPVETLMDYLSEFTVTMPILSFIGTNDHPEEPFVKVYCVQTLAIQQYTLDLFLCMPPPRENVGFEKSDSTVSRE 560 
WD40-rpts                                                                                      

Query      561 ANLVESTLETSGMKPTELPSVGSVPKPSILVNRSENANMLSFPAGPASAGITPPAIVPPNGEPKTSGMPSETSDVDSAYA 640 
WD40-rpts                                                                                      

Query      641 PSPQLPLSPRLSSKLSGYHTPVEAFEQVLPHHKLGGKTSSADYFYVRQTDDVGGRNLDVSSVEENCRSKDTNVTPDDDVS 720 
WD40-rpts                                                                                      

Query      721 GIRSPSAFFKQPTHLVTPSEILMGVSSTEASITTEDKRDRDANIEEVNNDARGLEVELKEVGEAQTSQNGEINYHETTEN 800 
WD40-rpts                                                                                      

Query      801 HTSESRENIFCSQASNLSTEMARDRHPITEGSAIPGDSMAYGQPLQAGDERGLDSRDVSAKLPESGSSSGLVATNSKGKK 880 
WD40-rpts                                                                                      

Query      881 QKAKNSQGPGLSSTSSNVANLADSFNEQSQSLNHPMADLLPQLLALQETMTQVMASQKEMQRQLSNAVTGPIVKEGKKLE 960 
WD40-rpts                                                                                      

Query      961 VALGRMIEKSSKSNADALWAHFQEEAVKNEKALRDHGQQIMNETTNFTSKELNAMFEKTMKKEFASVGPTLARVVTPVIE 1040
WD40-rpts                                                                                      

Query     1041 KTVSSAITESFQRGIGDKAVNQLEKSVNSKLETTVARQIQAQFQTSGRQVLQEGLRSSMESSVIPSFERSCKTMFEQVDS 1120
WD40-rpts                                                                                      

Query     1121 TLQKGIGKHTSATQQRIDSGQSQLAHTLRETISSASSVTQALNRELAESQRNRLALTAAGSNPLVTQLSNGPLGALLEKV 1200
WD40-rpts                                                                                      

Query     1201 EAPMDPTTELSRLISERKYEESFTSALQRSDVSIVSWLCSQVDLRGLLAMNPLPLSQGVLLSLLQQLACDISTDTSRKLG 1280
WD40-rpts                                                                                      

Query     1281 WMTDVVTAINPSDQMIAVHARPIFEQVYQILHHHRNAPGSDVSAVRLIMHVINSLLMSCK 1340
WD40-rpts                                                                  

4 WD40-repeats found in QUERY=AT3G13290.1 (Len=1340):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3   172-208      3.48  258.43  0.02030       12.5%     35.20
  WD 2:  Seg  6   209-250      6.37  377.72  0.00051       40.0%     47.62
  WD 3:  Seg 14   317-369      6.71  391.85  0.00033       37.5%     52.18
  WD 4:  Seg 18   373-418      2.99  238.03  0.03791       32.5%     46.93

Multiple sequence alignment of 4 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  172-208    P---------------ITKY-GSDPQ-LVLGRQI-----AV-NK-VYICYG-LKGGSIRVLN
   WD 2  209-250    INTA------------LRSLFRGHSQ-RVTDMAF-----FAEDV-HLLASV-SLDGKVFVWK
   WD 3  317-369    SAEAPLQCHLDKLIDGVQIV-GKHDG-EVTDLSM-----CQ-WMTTRLVSS-SVDGTVKIWQ
   WD 4  373-418    -TQP------------LVVL-RPHDGLPVNSAIFVTSPERP-DH-IILITGGPLNREIKIWV

   WD40 Template    TGEC------------LRTL-SGHTS-GVTSVSF-----SP-DG-KRLVSG-SEDGTIKVWD