Input parameters:

  Query = AT3G11830.1 (Len=557)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G11830.1, Len=557):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVTISNDGATIMKLLDIVHPAAK 80  
WD40-rpts                                                                                      

Query       81 ILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAK 160 
WD40-rpts                                                                                      

Query      161 CAATTLSSKLIGGEKEFFATMVVDAVMAIGNDDRLNLIGIKKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQPKKFLNPKI 240 
WD40-rpts                                                                                      

Query      241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVESGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEE 320 
WD40-rpts                                                                                      

Query      321 DLNRVAAAAGGTVQTSVNNIIDEVLGTCEIFEEKQVGGERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVR 400 
WD40-rpts                                          (___________________________________________

Query      401 RAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAMQSGEGAS 480 
WD40-rpts      __________________WD 1__________________________________________________________

Query      481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGDAAGAMGRGRGGGRGRGMRRR 557 
WD40-rpts      ___)                                                                         

1 WD40-repeats found in QUERY=AT3G11830.1 (Len=557):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10   357-484      2.83  231.42  0.04634       32.5%     39.53

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  357-484    GGERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAMQSGEGASYGVD

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK-------------------------RLVSGSE---------------------------------------------D------------------GTIKVWD