Input parameters:

  Query = AT3G09620.1 (Len=989)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G09620.1, Len=989):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLEKSKSRKENDRKDRDRSKKENGRRDTTEMRSRVKRCDSEEEERIRIRRDRKSSDFEEEEYERDSKRRGEDKGRGRRER 80  
WD40-rpts                                                                                      

Query       81 DRDRGKYLKRDRERREREKEKGRKKQKKERSREDCNEESDDVKCGLKRKRTERSRHGDDDVEKKTRDEQVEDEQKQLAEE 160 
WD40-rpts                                                                                      

Query      161 VEKRRRRVQEWQELKRQNEEAQIESKGPETGKAWTLDGESDDEVKSDSEMDVDRDTKLENGGDAKMVASENETAVTVSEN 240 
WD40-rpts                                                                                      

Query      241 GGDRAADEDEIDPLDAFMNTMVLPEVEKLSNIVIDGILDFKMNGKETGDQAKKGFNKAALGRIIQGEDSDSDYSEPKSDD 320 
WD40-rpts                                                                                      

Query      321 DPSLDEDDEEFMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQ 400 
WD40-rpts                                                                                      

Query      401 TGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRE 480 
WD40-rpts                                                                                      

Query      481 LVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFD 560 
WD40-rpts                     (__________________________WD 1__________________________)       

Query      561 MGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEW 640 
WD40-rpts                                                                                      

Query      641 YEKGKVLVFVRSQEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISE 720 
WD40-rpts                                                                                      

Query      721 DDAKYAPDLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEEKS 800 
WD40-rpts                                                                                      

Query      801 DSEDENDVVRKAGGDISQQQITLAQIAAIASAASKAPVTANQLLPNGGGLATEPGIPPTDGAGRVAAMIAAANVQQYLAK 880 
WD40-rpts                                                                                      

Query      881 IQADAIPEHYEAELEINDFPQNARWKVTHKETLGPISEWSGASITTRGKFYEAGRIPGPEERKLYLFVEGPTEISVKTAK 960 
WD40-rpts                                                                                      

Query      961 AELKRVLEDITNQTFSLPGGAQSGRYSVL 989 
WD40-rpts                                   

1 WD40-repeats found in QUERY=AT3G09620.1 (Len=989):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   496-553      3.01  238.99  0.03682       20.0%     32.49

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  496-553    LGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMD

   WD40 Template    TGECLRTLSGHTS----------GVTSVSFSPD--------GKRLVSGSEDGTIKVWD