Input parameters:

  Query = AT3G08710.2 (Len=140)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G08710.2, Len=140):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSCVSKGKGDDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFL 80  
WD40-rpts      (_______________________WD 1______________________)                             

Query       81 LVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKVTSIIDSVPESPQRP 140 
WD40-rpts                                                                  

1 WD40-repeats found in QUERY=AT3G08710.2 (Len=140):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-51       3.52  259.96  0.01937       30.0%     21.97

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-51     MGSCVSKGKGDDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVAN

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSG-----------SEDGTIKVWD