Input parameters:

  Query = AT3G07400.1 (Len=1003)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G07400.1, Len=1003):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESIQSRVESWIRDQRARFLRVSWGPIQWRFRWPPWNGGDADQRIKIRREYEKRKKQIEDLCLALKSESVEDLQDILCCM 80  
WD40-rpts                                                                                      

Query       81 VLSECVYKRPASEMVRAVNKFKADFGGQFISLERVQPSSDHVPHRYLLAEAGDTLFASFVGTRQYKDIMADANILQGHIF 160 
WD40-rpts                                                                                      

Query      161 HDDVAEDECIEASEPIQSEPLKNNGEGLRNPKQLRQKPKPAAHRGFLARAKGIPALELYRLAQKKKRKLVLCGHSLGGAV 240 
WD40-rpts                                                                     (________________

Query      241 AALATLAILRVVAASSKRGNENIHVKCITFSQPPVGNAALRDYVHEKGWHHYFKSYCIPEDLVPRILSPAYFHHYNEQRI 320 
WD40-rpts      ________________________WD 1_______________________________________)            

Query      321 SMAGETEATNGQGVTSEAEKRKTKEHEQLVIGVGPVQNSFWRLSKLVPLEAVKKQLDRYIGKKEDPAETSTANESAVLAP 400 
WD40-rpts                                                                                      

Query      401 IRDVVIEPQSLEIEEGKDGISLKPLPDAGNGPTVSGRSGGKTNSPNGFRVPYLPSYVPFGELYLLGTASVESLSEGEYSK 480 
WD40-rpts                                                                                      

Query      481 LTSVRSVITELRERLQSHSMKSYRSRFQRIHDLCMDVDGFFGVDQQKQFPHLQQWLGLAVGGSIELGHIVESPVIRTATS 560 
WD40-rpts                                                                                      

Query      561 IAPLGWKGVPGDKNAELLKVDITGFGLHLCSFVHAQVNGNWCSTTVESFPTTPAYSSDNVEQTELQKIRVVIGAPLKRPP 640 
WD40-rpts                                                                                      

Query      641 SNQIVEDPLVPMFSSVDSKTGFPKEGINLGFFQEDKFVRPEGLEDLYIFCTSDFATVAKEVEVRTRRVRLLGLEGAGKTS 720 
WD40-rpts                                                                                      

Query      721 LFRAILGQSMLSSMTHVENLQIQSDVQECIIGGVCYSDTVGVNLQELHLEASRFREELWKGVRNLSKKIDLIILVHNLSH 800 
WD40-rpts                                                                                      

Query      801 RIPRYQNSTTLLQQQQPALALLLDEVKSLGIPWVLAITNKFSVSAHQQKSAIEAVLQAYQASPNTTGIVNSIPYIISGSG 880 
WD40-rpts                                                                                      

Query      881 TSSLPWAAVNAGNDGSVGVPKMIFAPLDLVKKPFQRKDTVFPVDGVNSLCELVHRVLQTQEEACFEELARDRLLVELAKD 960 
WD40-rpts                                                                                      

Query      961 RVVDGSQAKSSSMSAAAVGASLGAGLGLVLAVVMGAGSALRKP 1003
WD40-rpts                                                 

1 WD40-repeats found in QUERY=AT3G07400.1 (Len=1003):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   224-308      2.81  230.57  0.04756       25.0%     27.23

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  224-308    KKKRKLVLCGHSLGGAVAALATLAILRVVAASSKRGNENIHVKCITFSQPPVGNAALRDYVHEKGWHHYFKSYCIPEDLVPRILS

   WD40 Template    TGECLRTLSGHT---------------------------SGVTSVSFS--PDGK----------------RLVSGSEDGTIKVWD