Accession: AT3G06880.2 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT3G06880.2 (Len=1264)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G06880.2, Len=1264):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAYLSSSQSTFISCSENSSLDSILVSINVYILGVISDPEAWISLKQKCITLLSIEEDNTLFEFSSEHSALSNLYWGIDSI 80  
WD40-rpts                                                                                      

Query       81 EASIHPECSEEKTSRLRNSERMLQMPALLDEQGTTTSGVPNTVLISFSYFYLSIVSYLQGDSLQSTLHFLQSVLVSPEIV 160 
WD40-rpts                                                                                      

Query      161 RTDIAPELCESIFFTPGVYKSDEEIREIARKYKYRATYYQVMSYGETHQPPRECIETPVRRQKEYGQEIFAANAHSVAEK 240 
WD40-rpts                                                                                      

Query      241 LELSETCEKLLQYQNLHSVDLQEEELNDIFNKIKASRKIEKSENNFEGSQCLDCNLQEDYNAEPGKSTRVRCLNEFLNES 320 
WD40-rpts                                                                                      

Query      321 QPDTREDIGTDTLANIFCVSQQQAHKEANKAYNEDTLANRSSSFIGNFNRSIFEIQAQQSKTTWNTHLEDASSLRQLDLE 400 
WD40-rpts                                                                                      

Query      401 EISVFGQKGSISFEGMRRNLQTKKRGNGLETLSRRAPTMDLWMNLQSLIKEVLGNADEKYVSEVTMIYQMLNRKEGFKYS 480 
WD40-rpts                                                                                      

Query      481 MLKDVILDQLFTAISSSEEKTVIKASMTALTKIISVNRTALEEVKRKGLNLSHLANALKQNVQEAAILIYLIKPSPTEIK 560 
WD40-rpts                                                                                      

Query      561 SLELLPALVDVVASTSSSSSCYTFIPSPSYLTPPAASLMIIEVLITAFDHATNTMHLAAISSPSVLCGLLDVAKSGNSGE 640 
WD40-rpts                                                                                      

Query      641 FISLTSILVKCMQFDGLHRKYIYQHTRVAPFAHLLQSKDQEEICIALQFLHEVLKIPRSSAIKILQQIKKEGSFDIKVTL 720 
WD40-rpts                                                                                      

Query      721 LHCIKHLQGDHKLFAADILLQLNALDSPPENKKYRNEATRALLDAVTYSEGSNMQLLSTFILANIGGTYSWTGEPYTAAW 800 
WD40-rpts                                                                                      

Query      801 LMKRGGLTSMSHMNMIRNINWSDECLQDTGIDGWCCKIARRIIDTGKATFCGLQEGLKSKNKSVSKACLIAIAWLSIEIS 880 
WD40-rpts                                                                                      

Query      881 KGPNSLKYSACEVLLDEVAQFLHPGLELEERLLACICIYNFSSGKGIHKLVNFSEGVRESLRRLSHVTWMADELHKATYY 960 
WD40-rpts                                                                                      

Query      961 LFSKSDQRISCVHTQTVEMHQSGSGAVTALIYHKGLLFSGFSDGSIRVWNVNKKIATLLWDIKEHKSTVTCFSLSETGEC 1040
WD40-rpts                   (________________WD 1_______________)     (_________________WD 2___

Query     1041 VLSGSADKTIRVWQIVKGKLECAEVIKTKDSIRKLEAFGNMIFVITKGHKMKLLDSSRISQSIFKGKGVKSMVSAQGKIY 1120
WD40-rpts      _____________)(__________________WD 3_________________)(________________WD 4____

Query     1121 IGCIDTSIQELIVANKREKEIKAPTRSWRLQNKPINSVVVYKDMLYSSSTYVEMSNIKDLRRNYEPQMSITAEKGSNIVA 1200
WD40-rpts      ___________)(______________________WD 5_____________________)   (_______________

Query     1201 MGVVEDFIYLNRSSSANTLQIWLRRTQQKVGRLSAGSKITSLLTANDIVFCGTEAGVIKGWIPL 1264
WD40-rpts      __WD 6________________)   (_______________WD 7_______________)

7 WD40-repeats found in QUERY=AT3G06880.2 (Len=1264):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   974-1010     6.07  365.24  0.00074       35.0%     42.92
  WD 2:  Seg 15  1016-1054     9.31  499.06  1.2e-05       40.0%     52.04
  WD 3:  Seg 19  1055-1095     3.42  256.04  0.02185       10.0%     40.41
  WD 4:  Seg 23  1096-1132     4.20  288.33  0.00808       15.0%     48.84
  WD 5:  Seg 27  1133-1181     3.99  279.33  0.01066       17.5%     44.75
  WD 6:  Seg 30  1185-1223     6.45  380.92  0.00046       15.0%     51.78
  WD 7:  Seg 34  1227-1262     4.44  298.18  0.00595       30.0%     48.51

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  974-1010   T------------QTVEMHQSGSGAVTALIYHKGLLFSGFSDG-SIRVWN
   WD 2 1016-1054   -AT--------LLWDIKEHKSTVTCF-SLSETGECVLSGSADK-TIRVWQ
   WD 3 1055-1095   IVK--------GKLECAEVIKTKDSIRKLEAFGNMIFVITKGH-KMKLLD
   WD 4 1096-1132   SSR--------ISQSIFKG-KGVKSM-VSAQG--KIYIGCIDT-SIQELI
   WD 5 1133-1181   VANKREKEIKAPTRSWRLQNKPINSV-VVYKDMLYSSSTYVEMSNIKDLR
   WD 6 1185-1223   -EP--------QMSITAEKGSNIVAM-GVVEDFIYLNRSSSAN-TLQIWL
   WD 7 1227-1262   -QQ--------KVGRLSAG-SKITSL-LTAND--IVFCGTEAG-VIKGWI

   WD40 Template    TGE--------CLRTLSGHTSGVTSV-SFSPDGKRLVSGSEDG-TIKVWD