Input parameters:

  Query = AT3G05090.2 (Len=753)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G05090.2, Len=753):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHRVGSAGSNGGSVRTRKEKKLTYVLNDANDTKHCAGINCLDVLKSSVSNDQSYLFTGSRDGTLKRWAFDEDATFCSATF 80  
WD40-rpts                                (__________________WD 1__________________)     (______

Query       81 ESHVDWVNDAALAGESTLVSCSSDTTVKTWDGLSDGVCTRTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWDIEAAL 160 
WD40-rpts      __________WD 2________________)    (_________________WD 3_________________)(____

Query      161 SPVTKPNDANEDSSSNGANGPVTSLRTVGSSNNISVQSSPSHGYTPTIAKGHKESVYALAMNDTGTMLVSGGTEKVLRVW 240 
WD40-rpts      _______________WD 4___________________)   (_________________WD 5________________

Query      241 DPRTGSKSMKLRGHTDNVRVLLLDSTGRFCLSGSSDSMIRLWDLGQQRCLHTYAVHTDSVWALACNPSFSHVYSGGRDQC 320 
WD40-rpts      )   (_________________WD 6________________)   (_________________WD 7____________

Query      321 LYLTDLATRESVLLCTKEHPIQQLALQDNSIWVATTDSSVERWPAEVQSPKTVFQRGGSFLAGNLSFNRARVSLEGLNPA 400 
WD40-rpts      ____)(_________________WD 8________________)                                    

Query      401 PAYKEPSITVPGTHPIVQHEILNNKRQILTKDAAGSVKLWDITRGVVVEDYGKISFEEKKEELFEMVSIPSWFTVDTRLG 480 
WD40-rpts             (______________WD 9______________)(_______________WD10______________)    

Query      481 CLSVHLETPQCFSAEMYSADLKVSGRPEDDKINLARETLKGLLGHWLAKKKHKPKPQVLASGDTLSVKDTKKNLSASKTE 560 
WD40-rpts                                     (__________________WD11_________________)        

Query      561 ESSAASDPVYPPFEFSSVSPPSIITEGSQGGPWRKKITEFTGTEDEKDFPLWCLDAVLNNRLPPRENTKLSFFLHPCEGS 640 
WD40-rpts                                                                                      

Query      641 SVQVVTLGKLSAPRILRVHKVTNYVVEKMVLDNPLDSLAIDAASVSGGQPQPLFSGNGLLQSGLKPWQKLRPSIEILCNS 720 
WD40-rpts                                                                                      

Query      721 QVLSPDMSLATVRAYVWKKPEDLILNYRVAIAR 753 
WD40-rpts                                       

11 WD40-repeats found in QUERY=AT3G05090.2 (Len=753):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    27-68       6.88  398.98  0.00026       30.0%     39.09
  WD 2:  Seg  7    74-111      7.52  425.45  0.00011       32.5%     50.57
  WD 3:  Seg 11   116-155      7.83  437.99  7.8e-05       32.5%     55.22
  WD 4:  Seg 15   156-199      6.14  368.22  0.00068       10.0%     42.00
  WD 5:  Seg 19   203-241      9.07  489.24  1.6e-05       30.0%     51.43
  WD 6:  Seg 23   245-283      9.44  504.77  9.8e-06       35.0%     57.45
  WD 7:  Seg 27   287-325      8.61  470.36  2.8e-05       27.5%     57.67
  WD 8:  Seg 31   326-364      4.85  315.00  0.00354        7.5%     52.81
  WD 9:  Seg 38   408-441      5.38  336.86  0.00180       12.5%     46.25
  WD10:  Seg 42   442-476      3.64  264.96  0.01661       12.5%     25.77
  WD11:  Seg 49   512-552      4.66  307.11  0.00452       17.5%     21.30

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   27-68     NDANDTK----HCAGINCLDVLKSSVSN-DQSYLFTGSRDGTLKRWA
   WD 2   74-111    -T--FCS----ATFESHVDWVNDAALAG-EST-LVSCSSDTTVKTWD
   WD 3  116-155    -G--VCT----RTLRQHSDYVTCLAVAAKNNNVVASGGLGGEVFIWD
   WD 4  156-199    IE--AALSPVTKPNDANEDSSSNGANGP-VTSLRTVGSSNNISVQSS
   WD 5  203-241    -G--YTP----TIAKGHKESVYALAMND-TGTMLVSGGTEKVLRVWD
   WD 6  245-283    -G--SKS----MKLRGHTDNVRVLLLDS-TGRFCLSGSSDSMIRLWD
   WD 7  287-325    -Q--RCL----HTYAVHTDSVWALACNP-SFSHVYSGGRDQCLYLTD
   WD 8  326-364    LA-TRES----VLLCTKEHPIQQLALQD-NS--IWVATTDSSVERWP
   WD 9  408-441    ------------ITVPGTHPIVQHEILN-NKRQILTKDAAGSVKLWD
   WD10  442-476    -----------ITRGVVVEDYGKISFEE-KKEELFEMVSIPSWFTVD
   WD11  512-552    -I--NLARETLKGLLGH--WLAKKKHKP-KPQVLASGDTLSVKDTKK

   WD40 Template    TG--ECL----RTLSGHTSGVTSVSFSP-DGKRLVSGSEDGTIKVWD