Input parameters:

  Query = AT3G03900.1 (Len=208)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G03900.1, Len=208):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSTVGNSTNIFWQESPIGKTERQKLLNQKGCVVWITGLSGSGKSTLACSLSRELNNRGKLSYILDGDNLRHGLNKDLGFK 80  
WD40-rpts                                                              (_______________________

Query       81 AEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDACREMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKG 160 
WD40-rpts      ___________________________WD 1_________________________________________________

Query      161 FTGIDDPYESPLNCEIELKEKEGECPSPVAMAEEVISYLEDKGFLQNE 208 
WD40-rpts      _)                                              

1 WD40-repeats found in QUERY=AT3G03900.1 (Len=208):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    57-162      2.86  232.97  0.04422       25.0%      2.78

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   57-162    RGKLSYILDGDNLRHGLNKDLGFKAEDRVENIRRVGEVAKLFADAGLICIASLISPYRKDRDACREMIQNSSFIEVFMNMSLQLCEARDPKGLYKLARAGKIKGFT

   WD40 Template    TGECLRTLSG--------HTSGVT--------------------------SVSFSPD----------------GKRLVSGS------EDGT----------IKVWD