Input parameters:

  Query = AT3G03710.1 (Len=922)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G03710.1, Len=922):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MLTSPSNALHSSTPQFWPLRRSKLCRSRNFPRFHSGERSSGGGGKLCSLSLLSGSGAGKFSVRALVRPDDTDDADSVGDG 80  
WD40-rpts                                                                                      

Query       81 SLAFPNHVSVKIPFGNREILVETGLMGRQASSAVTVTDGETIVYTSVCLADVPSEPSDFLPLYVHYQERFSAVGRTSGGF 160 
WD40-rpts                                                                                      

Query      161 FKREGRTKDHEVLICRLIDRPLRPTMPKGFYNETQILSWVLSYDGLHAPDALAVTSAGIAVALSEVPNAKAIAGVRVGLI 240 
WD40-rpts                                                                                      

Query      241 GGEFIVNPTVKEMEESQLDLFLAGTDTAILTIEGYSNFLPEEMLLQAVKVGQDAVQATCIAIEVLAKKYGKPKMLDAIRL 320 
WD40-rpts                                                                                      

Query      321 PPPELYKHVKELAGEELTKALQIKSKISRRKAISSLEEKVLTILTEKGYVIDEVAFGTIEAQPDLLEDEDEDEEVVPEGE 400 
WD40-rpts                                                                                      

Query      401 VDQGDVHIRPIPRKPIPLLFSEVDVKLVFKEVSSKLLRRRIVEGGKRSDGRTLDEIRPINSRCGLLPRAHGSTLFTRGET 480 
WD40-rpts                                                                                      

Query      481 QALAVVTLGDKQMAQRIDNLEGSDEYKRFYLQYTFPPSSVGEVGRIGAPSRREIGHGTLAERALETILPSDDDFPYTIRV 560 
WD40-rpts                                                                                      

Query      561 ESTVIESNGSSSMASVCGGCLALQDAGVPVKCSVAGIAMGMVWDTEEFGGDGSPLILSDITGAEDASGDMDFKVAGNEDG 640 
WD40-rpts                                                                                      

Query      641 VTAFQMDIKVGGITLEIMEKALIQAKAGRRHILAEMAKCSPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIE 720 
WD40-rpts                                             (___________________________WD 1_________

Query      721 ESGVEAIDMQDDGTVKIMAIDVASLERAKAIISGLTMVPSVGDIYRNCEIKSMAPYGAFVEIAPGREGLCHISELSAEWL 800 
WD40-rpts      __________________)                                                             

Query      801 AKPEDAYKVGDRIDVKLIEVNEKGQLRLSVRALLPESETDKDSQKQQPAGDSTKDKSSQRKYVNTSSKDRAAAGASKVSS 880 
WD40-rpts                                                                                      

Query      881 GDELVLKKKDVRRATGGSSDKTMNSNSSTNEESLVNGEATIS 922 
WD40-rpts                                                

1 WD40-repeats found in QUERY=AT3G03710.1 (Len=922):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 21   680-739      3.27  249.84  0.02643       22.5%     30.23

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  680-739    SPPPTLSLSKYAPLILIMKVHPSKVYSLIGSGGKKVKSIIEESGVEAIDMQDDGTVKIMA

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLV--SGS------------------EDGTIKVWD