Input parameters:

  Query = AT3G02060.1 (Len=823)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT3G02060.1, Len=823):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSLLPNPDPITVPLVLKLCSFPPPRRLFSLRLRRFTRKSSSLLPLVAVSSLSATAAKPTRWREKPELAESDSISLLNER 80  
WD40-rpts                                                                                      

Query       81 IRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKLKGIRQGTKAAGDGAFSYKVDPYSLLSGDYVVHKKVGIGRFVG 160 
WD40-rpts                                                                                      

Query      161 IKFDVPKDSSEPLEYVFIEYADGMAKLPLKQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLME 240 
WD40-rpts                                                                                      

Query      241 LYLHRLRQKRYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGK 320 
WD40-rpts                                                                                      

Query      321 QAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTHSLLGSRVVYSNLGLLVVD 400 
WD40-rpts                                                         (________________________WD 1

Query      401 EEQRFGVKQKEKIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRG 480 
WD40-rpts      _______________________)                                                        

Query      481 GQVFYVLPRIKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQNANTIIIQDVQ 560 
WD40-rpts                                                                                      

Query      561 QFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRELGQGFQLAEKDMGIRGFGTIFGEQQTGDVGN 640 
WD40-rpts                                                                                      

Query      641 VGIDLFFEMLFESLSKVEELRIFSVPYDLVKIDININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQY 720 
WD40-rpts                                                                                      

Query      721 GKEPYSMEIILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQIMAELLLELPRE 800 
WD40-rpts                                                                                      

Query      801 QLLNWMFQCLSELHASLPALIKY 823 
WD40-rpts                             

1 WD40-repeats found in QUERY=AT3G02060.1 (Len=823):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11   372-424      2.79  229.75  0.04875       20.0%     19.07

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  372-424    TGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLT

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGT-------------IKVWD