Input parameters:

  Query = AT2G47990.1 (Len=530)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G47990.1, Len=530):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEELRVRLNDHQVSKVFPVKPKSTAKPVSESETPESRYWSSFKNHSTPNLVSSVAALAFSPVHPHSLAVAHSATVSLFS 80  
WD40-rpts               (_____________WD 1_____________)(_________________WD 2________________)

Query       81 SQSLSSSRRFSFRDVVSSVCFRSDGALFAACDLSGVVQVFDIKERMALRTLRSHSAPARFVKYPVQDKLHLVSGGDDGVV 160 
WD40-rpts        (_________________WD 3________________)   (_________________WD 4______________

Query      161 KYWDVAGATVISDLLGHKDYVRCGDCSPVNDSMLVTGSYDHTVKVWDARVHTSNWIAEINHGLPVEDVVYLPSGGLIATA 240 
WD40-rpts      ___)   (_________________WD 5_________________)    (________________WD 6________

Query      241 GGNSVKVWDLIGGGKMVCSMESHNKTVTSLRVARMESAESRLVSVALDGYMKVFDYGRAKVTYSMRFPAPLMSLGLSPDG 320 
WD40-rpts      ________)    (__________________WD 7__________________)(__________________WD 8__

Query      321 STRVIGGSNGMVFAGKKKVRDVVGGQKKSLNLWSLISDVDESRRRALRPTYFRYFQRGQSEKPSKDDYLVKEKKGLKLTR 400 
WD40-rpts      _______________)                    (________________WD 9________________)      

Query      401 HDKLLKKFRHKEALVSVLEEKKPANVVAVMEELVARRKLMKCVSNMEEGELGMLLGFLQRYCTVQRYSGLLMGLTKKVLE 480 
WD40-rpts                                                                                      

Query      481 TRAEDIKGKNEFKGLLRNLKREVNQEIRIQQSLLEIQGVIAPLMRIAGRS 530 
WD40-rpts                                                        

9 WD40-repeats found in QUERY=AT2G47990.1 (Len=530):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-41       5.70  349.95  0.00120       15.0%     36.88
  WD 2:  Seg  4    42-80       6.73  392.68  0.00032       15.0%     47.50
  WD 3:  Seg  7    83-121      7.08  407.06  0.00020       22.5%     52.96
  WD 4:  Seg 11   125-164      8.49  465.46  3.3e-05       40.0%     55.88
  WD 5:  Seg 15   168-207      8.40  461.83  3.7e-05       40.0%     55.01
  WD 6:  Seg 19   212-249      6.01  362.74  0.00080       22.5%     48.55
  WD 7:  Seg 23   254-295      7.82  437.89  7.8e-05       35.0%     57.09
  WD 8:  Seg 27   296-336      7.11  408.39  0.00019       27.5%     49.23
  WD 9:  Seg 32   357-394      3.26  249.45  0.02674       10.0%      8.85

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-41     --------N-DHQVSKVFPVKP---K-STAKPVSESETPESRYWS
   WD 2   42-80     SFK-NHSTP-NLVSSVAALAFS---P-VHPHSLAVAHSATVSLFS
   WD 3   83-121    -SLSSSRRF-SFRDVVSSVCFR---S-DGALFAACDLSGVVQVFD
   WD 4  125-164    -RMALRTLR-SHSAPARFVKYP---VQDKLHLVSGGDDGVVKYWD
   WD 5  168-207    -ATVISDLL-GHKDYVRCGDCS---PVNDSMLVTGSYDHTVKVWD
   WD 6  212-249    -TSNWIAEI-NHGLPVEDVVYL---P-SGGLIATAG-GNSVKVWD
   WD 7  254-295    -GKMVCSME-SHNKTVTSLRVARMES-AESRLVSVALDGYMKVFD
   WD 8  296-336    YGRAKVTYSMRFPAPLMSLGLS---P-DGSTRVIGGSNGMVFAGK
   WD 9  357-394    SDVDESRRR-ALRP--TYFRYF---Q-RGQSEKPSKDDYLVKEKK

   WD40 Template    TGECLRTLS-GHTSGVTSVSFS---P-DGKRLVSGSEDGTIKVWD