Input parameters:

  Query = AT2G47910.1 (Len=246)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G47910.1, Len=246):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATKAVLLPWLIPSPRHVSLFPVVQLPALETAGWCVRKRRAEDVAVSVAFNPSGNFDISAFENDQDSDKVEPPMPPTTGR 80  
WD40-rpts                                    (__________________WD 1__________________)        

Query       81 YEVVIDNDSIGRLDLSPFQRAIGITSPDDFGVAEPKRYLDRTIGFTINYKREDPGDPRELSEYPDVRLWFVRLDAMYPWL 160 
WD40-rpts                                                                                      

Query      161 PLLLDWRAGELARYAAMLVPHQMSLRMGVVFNPEALELFVMNKVFVVYPWLKRHGVPKPRLKTSDMARMLGFGIGDELFD 240 
WD40-rpts                                                                                      

Query      241 LIDHNE 246 
WD40-rpts            

1 WD40-repeats found in QUERY=AT2G47910.1 (Len=246):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    31-72       2.77  229.14  0.04965       22.5%     24.23

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   31-72     TAGWCVRKRRAEDVAVSVAFNPSGNFDISAFENDQDSDKVEP

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGS--EDGTIKVWD