Input parameters:

  Query = AT2G47790.1 (Len=392)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G47790.1, Len=392):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEVSSEMEVEVQNRQLSDSSPAQNVKKFGLKNSIQTNFGSDYVFQIVPKIDWTAIAVSLSTNTVKLYSPVTGQYYGECK 80  
WD40-rpts                               (___________________WD 1___________________)   (_______

Query       81 GHSDTVNQIAFSSDSAASPHVLHSCSSDGTIRSWDTRSFQQVSRIDTGNDQEIFSFSYGGAADNLLAGGCKEQVLLWDWR 160 
WD40-rpts      ____________WD 2__________________)    (_________________WD 3________________)(_

Query      161 NSKQVACLEESHMDDVTQVHFVPNKPNKLLSASVDGLICLFNTEGDINDDDHLESVINVGTSIGKIGFLGDGYKKLWCLT 240 
WD40-rpts      __________________WD 4___________________)       (_________________WD 5_________

Query      241 HIETLSIWNWEDGSCEVNLEKARELASDSWTQDNVDYFVDCHCPGGEDLWVIGGTCAGTVGYFPVNYKQPGSIGTAEAIL 320 
WD40-rpts      ________)   (_________________WD 6________________)                       (_____

Query      321 GGGHIDVVRSVLQMPGEYGGAAGLFGWTGGEDGRLCCWKSDEDATEINRSWTSSELVVKPPRNRKKNRHSPY 392 
WD40-rpts      _______________WD 7___________________)                                 

7 WD40-repeats found in QUERY=AT2G47790.1 (Len=392):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    26-69       7.15  410.06  0.00019       10.0%     51.82
  WD 2:  Seg  6    73-115      8.74  475.50  2.4e-05       40.0%     56.41
  WD 3:  Seg 10   120-158      8.26  455.89  4.5e-05       20.0%     52.04
  WD 4:  Seg 14   159-202      7.18  411.23  0.00018       30.0%     52.00
  WD 5:  Seg 18   210-249      7.89  440.39  7.2e-05       20.0%     53.42
  WD 6:  Seg 22   253-291      4.35  294.40  0.00669       15.0%     44.90
  WD 7:  Seg 28   315-359      7.37  419.11  0.00014       35.0%     40.93

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   26-69     VKKFGLKNSIQTNFGSDYVFQIVPKID------W----T-AIAVSLSTNTVKLYS
   WD 2   73-115    -G----QYYGECKGHSDTVNQIAFSSD------SAASPH-VLHSCSSDGTIRSWD
   WD 3  120-158    -Q----QVSRIDTGNDQEIFSFSYGGA------A----D-NLLAGGCKEQVLLWD
   WD 4  159-202    WR-NSKQVACLEESHMDDVTQVHFVPN------K----PNKLLSASVDGLICLFN
   WD 5  210-249    -D----DHLESVINVGTSIGKIGFLGD------G---YK-KLWCLTHIETLSIWN
   WD 6  253-291    -G----SCEVNLEKARELASDSWTQDN------V----D-YFVDCHCPGGEDLWV
   WD 7  315-359    TA----EAI-LGGGHIDVVRSVLQMPGEYGGAAG----L-FGWTGGEDGRLCCWK

   WD40 Template    TG----ECLRTLSGHTSGVTSVSFSPD------G----K-RLVSGSEDGTIKVWD