Input parameters:

  Query = AT2G47410.1 (Len=1520)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G47410.1, Len=1520):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDWIHKSTPFMEPSNLAKLVQGNVPLQPHDSHSSLTDLDMDLREVYFLILHFLSIGPCERTFGHLRDEILEKGLLPRRYH 80  
WD40-rpts                                                                                      

Query       81 SWWSRSGIYSGRADDDGISLPLSYDNLIERYPHIEKDHLVKLLKQLILNPSFPSHMRVEGNAPNAADVPTLLGSGTFSLV 160 
WD40-rpts                                                                                      

Query      161 DRSNNIESQKARHVASYLRWPHMHADQVRGLSLREIGGGFRKHHRAPSILSACHAIAKPSTMVQKMQNIKKLRGHRNAVY 240 
WD40-rpts                    (_____________________WD 1_____________________)   (______________

Query      241 CAIFDRSGRYVITGSDDRLVKIWSMETALCLASCRGHEGDITDLAVSSNNALVASASNDFVIRVWRLPDGMPISVLRGHT 320 
WD40-rpts      ___WD 2________________)   (_________________WD 3________________)   (__________

Query      321 GAVTAIAFSPRQASVYQLLSSSDDGTCRIWDARYSQWLPRIYVPSPSDANTGSTSNASQSHQILCCAYNANGTIFVTGSS 400 
WD40-rpts      ________WD 4__________________)                  (_________________WD 5_________

Query      401 DSNARVWSASKPNLDDAEQPTHELDVLRGHENDVNYVQFSGCAVAPKSSTADALKEDSYPKFKNSWFCHDNIVTCSRDGS 480 
WD40-rpts      _______)            (_________________WD 6________________)                     

Query      481 AIIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPRGVNMIIWSLDNRFVLAAIMDCRICVWNAADG 560 
WD40-rpts                                           (_________________WD 7________________)   (

Query      561 SLVHCLTGHSESSYVLDVHPFNPRIAMSAGYDGKTIIWDIWEGIPIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFL 640 
WD40-rpts      _________________WD 8_________________)   (_________________WD 9________________

Query      641 NTGQGESQKNAKYDQFFLGDYRPLIRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLGALGVEWRP 720 
WD40-rpts      )(_________________WD10_________________)                       (______________W

Query      721 SSIKFSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDDNDSEYNAEVSSDGARASPCSNSSNELECS 800 
WD40-rpts      D11______________)                                                              

Query      801 SEDSDVENIHESSYHWKRRRKHPKVNVSTSSGRRDKRILDENDSSNSGIKRTKNRRIVVKASKRKHSDVKASRPQRAAAQ 880 
WD40-rpts                                                                                      

Query      881 NARSLLSKISGSSSDEVDDDNDSSNSESDRSIPTLRQLDKPSQMLESLSNDKQKKRLIVKISVKKPAESMGSKGDVINQA 960 
WD40-rpts                                                                                      

Query      961 DLEQLSSKPLEENHRVIGIYSREPGSSSVDAKGDSGCQSIPYSMNTPQREKADNQLIRSSDQDQNMCKWREEIPVCEPTE 1040
WD40-rpts                                                                                      

Query     1041 LTAPENIEEAQPFYGDEADEILPKKVRRLRLKLRHPNSPRKLEPDEVADDLADGGDGFASIAPSFMNPIMDSEPVIDSVR 1120
WD40-rpts                                                                                      

Query     1121 DSSAHNFEFGEATADVIRRKRSIRSESSTRNSALRIRLGSGSVDKIKKQGIPSTSVYDDASLEEWPSTSKAGSRSRSASV 1200
WD40-rpts                                                                                      

Query     1201 SKPSLHTGIRLNSVSGKISWLLLSEHEEGCRYIPQLGDEVIYFKQGHQEFLKTKELNDRDRSRYLPRNLGAVEICKVEKL 1280
WD40-rpts                                                                                      

Query     1281 NYDTYPGSGDSCCKMTLRVLDSSSSHASRKEFQLTLPELINFPDFIVEKTRYDAAIQTNWKIGNECRVWWRDATGEGGAW 1360
WD40-rpts                                                                                      

Query     1361 WEGRIESSQVKSTDFPESPWERYRVVYETGETSLHSPWEFDNPEFPWEKSTIEDERREKLLSLFAGLVKSISKHQDSYGI 1440
WD40-rpts                                                                                      

Query     1441 QKLNEAAQKMDFCNRFPVPLYPELIHERLENQYYRSIESFKHDVDAMLSNAELYFVRSAHMLSKIKRLRDKLTKTLRKLI 1520
WD40-rpts                                                                                      

11 WD40-repeats found in QUERY=AT2G47410.1 (Len=1520):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   175-222      3.53  260.57  0.01901       17.5%     34.14
  WD 2:  Seg  7   226-264      9.20  494.60  1.3e-05       27.5%     50.35
  WD 3:  Seg 11   268-306      9.10  490.52  1.5e-05       30.0%     55.42
  WD 4:  Seg 15   310-351      8.98  485.76  1.8e-05       45.0%     51.25
  WD 5:  Seg 20   370-408      7.26  414.49  0.00016       17.5%     41.93
  WD 6:  Seg 23   421-459      5.54  343.40  0.00147       25.0%     22.27
  WD 7:  Seg 28   518-556      6.69  390.98  0.00033       22.5%     53.75
  WD 8:  Seg 32   560-599      7.58  427.67  0.00011       27.5%     54.72
  WD 9:  Seg 36   603-641      7.15  409.83  0.00019       20.0%     55.26
  WD10:  Seg 40   642-681      6.09  366.39  0.00072       10.0%     20.05
  WD11:  Seg 43   705-738      4.50  300.38  0.00556       10.0%     30.09

Multiple sequence alignment of 11 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  175-222    -ASYLRWPHMHADQVRGLSLREIGGGFRKHHRAPSI-LSACHAIAKPSTM
   WD 2  226-264    -MQNIKKLRGHRNAVYCAIFDRSGR---------YV-ITGSDDRLVKIWS
   WD 3  268-306    -ALCLASCRGHEGDITDLAVSSNNA---------LV-ASASNDFVIRVWR
   WD 4  310-351    -GMPISVLRGHTGAVTAIAFSPRQA------SVYQL-LSSSDDGTCRIWD
   WD 5  370-408    -NTGSTSNASQSHQILCCAYNANGT---------IF-VTGSSDSNARVWS
   WD 6  421-459    -THELDVLRGHENDVNYVQFSGCAV---------AP-KSSTADALKEDSY
   WD 7  518-556    -GGPRQRFLPTPRGVNMIIWSLDNR---------FV-LAAIMDCRICVWN
   WD 8  560-599    -GSLVHCLTGHSESSYVLDVHPFNP---------RIAMSAGYDGKTIIWD
   WD 9  603-641    -GIPIKVYEIGRFKLVDGKFSQDGT---------SI-VLSDDVGQIYFLN
   WD10  642-681    TGQGESQKNAKYDQFFLGDYRPLIR---------DT-NGHVLDQETQLLP
   WD11  705-738    ------MFQQRRLGALGVEWRPSSI---------KF-SVGPDFSLGQDYI

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK---------RL-VSGSEDGTIKVWD