WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT2G46560.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT2G46560.1 (Len=2513) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT2G46560.1, Len=2513): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MRYRIQLKPSGLERGSGDPRTDRIDHLPLRQLRSEIVPPAPTRSQSSIDWLPDFANYSWLAYGASTLVVISHLPSPLRGE 80
WD40-rpts
Query 81 DSTNGPFFRQILEVSGEPVTAVCWSPVTPSVGELAVGSGNYIFLFARDLKGSFCWSQNAILVQETIVEAIEWTGSGDGII 160
WD40-rpts
Query 161 VGGTDIVLWKRRNQSWEIAWKFSGDHLQDLVSSTWSFEGPFATATSWRKFPAECDDAGKSVLAYYSDGESYHNFELPHPQ 240
WD40-rpts
Query 241 RISMIQWRPMAAEQSAIGIGKSMRNVLMTCCLDGAVRLWCEVDGGKTKKGMKDVPDHKKSFCVAAVIEINQVLDGCLGRD 320
WD40-rpts
Query 321 LFLFWGTRTGGIFKTIEGTNQVFSMEKYDNENVGKCEWLVGYGPGNFATLWAVHCLDDISPMRFPRVTLWAKQESNEIGA 400
WD40-rpts
Query 401 GSLSLASATGSSDRLPLKKVSVLRNNLYGTPLICSSIYLSPQNTVYWSSLHTIKSHDSEDSSPNKSSLLKCIDGKVLYLD 480
WD40-rpts (_______
Query 481 GHGGKILQVASDPFVCEAGYTASLDSNGLIIICSSSVYLNRTIEHPISVASWKPCGRLQNQEFRLKYTSLCWAPSSLKDE 560
WD40-rpts ___________WD 1__________________)
Query 561 RFLLVGHVGGVDCFSVRNCGKGDDGYLTHYICTIPFTVNSPLQSGPTSIFAKPLSNSCGKTFKSNRFLLLSVWMKEKRFD 640
WD40-rpts
Query 641 ALSWSVTLHHFDTAGSTCDCHFHDFDSIGLGKWLFEDTFAGKTNCLAIRSCSSEIPESHREDEVTSFAVVNPSGRDLENG 720
WD40-rpts (________________________WD 2__
Query 721 VNSESQAYTIATGQADGSLKLWRSSFQESSTPSGLWELVGMLTVGQNPVSAISLTDSGHKIAALCTESHSKAARAVSIWE 800
WD40-rpts ______________________)
Query 801 IVHLIDSGVFILEDKVHVDAEVVAVRWSTTGNDQLLLGVCTQIEMRVYGIARQPCKSTSFAAYDYSSEAQIWQCFAVTRT 880
WD40-rpts
Query 881 FSAIHDLWWGPKAMTCLVHNDYISLHGQWLAVVDKKQKIDNYPEIFASNLPNLVNATEEGRDSEFLSDSGTNDINEADTT 960
WD40-rpts
Query 961 STSRGCIPLPSTSNAIDDGQVNSMSLIGTAYGSNTIDDIMSMGHMVEKLGGALPLYHPHALLVAIRSGNWKRASAALRHL 1040
WD40-rpts
Query 1041 AEYITSSDTSEKGYAVKSVLCPDILLSKYYEGSLSNGPNPKDFQWGGTSGSMLQYSQFQSGLQSKFNMESYSPNSPATDL 1120
WD40-rpts
Query 1121 EFSGFCEQLKKLSDEGNISRIEILQYFAIVDLLCEISNPHSTSVYASLDEPGRRFWVTLRFKQLFLARSSGKTASLEELD 1200
WD40-rpts
Query 1201 IDSSMIGWAFHSESQENLSGSLLPNESSWQQMRSQGFGFWYSNAAQLRSRMEKLARQQYLKNKNPKDCALLYIALNRVQV 1280
WD40-rpts
Query 1281 LAGLFKLSKDEKDKPLVVFLSRNFQEEKNKAAALKNAYVLMGKHQLELAIGFFLLGGEASSAINVCVKNLQDEQLALVIC 1360
WD40-rpts
Query 1361 RLIDGQGGALESNLIKKYILPSAVQRGDFWLASLLKWELGEYHRSILAMAGCLENPATESSTVSSNHVSFVDPSIGLYCL 1440
WD40-rpts
Query 1441 MLATKNSVKNALGERTASTLSRWASLMAATAFSRCGLPLEALECLSPSASGHGGTHQTSVPSNGQLHTTQGVFDHSVPHS 1520
WD40-rpts
Query 1521 SNWVSSGVSSTVDTHFRLGLAVQFLSMILREATAPLMNSEVVSCEKFSRFQHKLQTALEQFHQRFSLSASYLRNMMILSA 1600
WD40-rpts
Query 1601 YNRGLLSMGHNIFQENSSSGLSDDKSHTDEDLLQYSALSKLILKATDEKSLVLSRIIAACSVTCLHSVPCFEENKVSSGP 1680
WD40-rpts
Query 1681 DPKWSNALRFYFQGILESFSNLRTSIRLCLGSSVEDLKTKLAVVLDLVEYCLRLAMAWVLGDVHCLFRMVQPLVISYFNG 1760
WD40-rpts
Query 1761 HMPYEVDLESVKRVYHQEASVSVPDASDVGVNSKFSSVVENHGVGYPVYSIPEDERCLVTQACFWKHVSDFVKLKLVSIS 1840
WD40-rpts
Query 1841 INLDDGISNSGSAENFDAQTSLDSSDDIVCVTEKIMSVLGKTLISTLAQLSSYHVKQLVLVLKQKLEKRLQVPTLLWLLE 1920
WD40-rpts
Query 1921 CQGSQANFLNRDIPDAGVETEKNGDPVVSVRFWKLCVDPHLLHEAFLLENFDIFEWSKSKPLEDWSDMYREVIRKNELYV 2000
WD40-rpts
Query 2001 PCNQDGRSSNEVASLANHASNSSPKAAVTANENSAFQNPKEIHKRTGELIEALCINAINHRQAALASNRKGIIFFNLEDG 2080
WD40-rpts
Query 2081 DSSQNQSDYIWSDADWPHNGWANSESTPVPTCVSLGVGLGDKKGAHLGLGGATVGVVSLSKPGKADRVPGYSGLGAIADP 2160
WD40-rpts (______________WD 3_____________) (_________
Query 2161 GSFFTQIRRWLGVSGLGWETQEEFEEFVDPPPTVESVITRAFSNHPTMPLFLVGSSNTHIYLWEFGNERATATYGVLPAA 2240
WD40-rpts ________WD 4________________) (__
Query 2241 NVSPPYALASISAVQFGPFGHRFASAALDGTVCTWQSEVGGRSNIHPVESSLCFNGHASDVGYISSSGSIVAASGYSSSG 2320
WD40-rpts _______________WD 5________________) (_________________WD 6___________
Query 2321 ANVVVWDTLAPPSTSQASINCHEGGARSISVFDNDIGSGSISPMIVTGGKNGDVGLHDFRFIATGKMKKQRNPDGGSSTD 2400
WD40-rpts ______) (__________________WD 7_________________)
Query 2401 GDQNKNGMLWYIPKAHLGSVTKIATIPRTSLFLTGSKDGEVKLWDAKAAKLIHHWPKLHERHTFLQPNSRGYGGIIRAGV 2480
WD40-rpts (_________________WD 8________________) (______________________WD 9
Query 2481 TDIQVCPNGFITCGGDGTVKFVSLVDSSYGDAK 2513
WD40-rpts ______________________)
 9 WD40-repeats found in QUERY=AT2G46560.1 (Len=2513): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 29 473-514 3.99 279.55 0.01059 25.0% 38.51 WD 2: Seg 44 690-743 3.17 245.51 0.03018 30.0% 29.40 WD 3: Seg 77 2115-2147 3.56 261.85 0.01828 10.0% 12.77 WD 4: Seg 78 2151-2189 4.87 315.90 0.00344 12.5% 9.54 WD 5: Seg 83 2238-2276 6.82 396.32 0.00028 25.0% 39.37 WD 6: Seg 86 2288-2327 3.90 275.56 0.01198 27.5% 35.01 WD 7: Seg 89 2338-2378 4.03 281.14 0.01008 20.0% 49.85 WD 8: Seg 94 2407-2445 8.07 447.84 5.7e-05 30.0% 49.40 WD 9: Seg 99 2454-2503 3.68 266.69 0.01575 25.0% 40.81Multiple sequence alignment of 9 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 473-514 DGKVLY-LDG------------HGGKILQVA-SDPFVCE-------AGYT-------------ASL---DSNGLIIICS WD 2 690-743 SCSSEIPESH------------REDEVTSFAVVNP---S-------GRDLENGVNSESQAYTIATG---QADGSLKLWR WD 3 2115-2147 -------LGV------------GLGDKKGAH-LGL---G-------GATV-------------GVV---SLSKPGKADR WD 4 2151-2189 -YSGLGAIAD------------PGSFFTQIR-RWL---G-------VSGL-------------GWE---TQEEFEEFVD WD 5 2238-2276 -PAANVSPPY------------ALASISAVQ-FGP---F-------GHRF-------------ASA---ALDGTVCTWQ WD 6 2288-2327 -VESSLCFNG------------HASDVGYI---SS---S-------GSIV-------------AASGYSSSGANVVVWD WD 7 2338-2378 ------SINC------------HEGGARSIS-VFD---NDIGSGSISPMI-------------VTG---GKNGDVGLHD WD 8 2407-2445 -GMLWYIPKA------------HLGSVTKIA-TIP---R-------TSLF-------------LTG---SKDGEVKLWD WD 9 2454-2503 HWPKLHERHTFLQPNSRGYGGIIRAGVTDIQ-VCP---N-------G--F-------------ITC---GGDGTVKFVS WD40 Template TGECLRTLSG------------HTSGVTSVS-FSP---D-------GKRL-------------VSG---SEDGTIKVWD |
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Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |