Input parameters:

  Query = AT2G43900.1 (Len=1316)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G43900.1, Len=1316):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDIINNNHRDENDDDEEEALSAMSSVPPPRKIHSYSHQLRATGQKGHHRQRQHSLDDIPKITEIVSGCGISGDSSDDEFY 80  
WD40-rpts                                                                                      

Query       81 PYATTTNSSSFPFTGGDTGDSDDYLHQPEIGEDFQPLPEFVGSGGGVGMFKVPTRSPLHSARPPCLELRPHPLKETQVGR 160 
WD40-rpts                                                                                      

Query      161 FLRNIACTETQLWAGQESGVRFWNFDDAFEPGCGLSGRVQRGDEDAAPFQESASTSPTTCLMVDNGNRLVWSGHKDGKIR 240 
WD40-rpts                                                                                      

Query      241 SWKMDYVLDDGDDSPFKEGLAWQAHKGPVNSVIMSSYGDLWSCSEGGVIKIWTWESMEKSLSLRLEEKHMAALLVERSGI 320 
WD40-rpts         (__________________________WD 1__________________________)                   

Query      321 DLRAQVTVNGTCNISSSEVKCLLADNVRSKVWAAQLQTFSLWDGRTKELLKVFNSEGQTENRVDMPLGQDQPAAEDEMKA 400 
WD40-rpts                                                                                      

Query      401 KIASTSKKEKPHGFLQRSRNAIMGAADAVRRVATRGGGAYEDAKRTEAMVLAGDGMIWTGCTNGLLIQWDGNGNRLQDFR 480 
WD40-rpts                                                                                      

Query      481 HHQCAVLCFCTFGERIYIGYVSGHIQIIDLEGNLIAGWVAHNNAVIKMAAADGYIFSLATHGGIRGWPVISPGPLDGIIR 560 
WD40-rpts                                                                                      

Query      561 SELAEKERTYAQTDSVRILTGSWNVGQGKASHDALMSWLGSVASDVGILVVGLQEVEMGAGFLAMSAAKESVGGNEGSTI 640 
WD40-rpts                                                                                      

Query      641 GQYWIDTIGKTLDEKAVFERMGSRQLAGLLISLWVRKNLRTHVGDIDVAAVPCGFGRAIGNKGGVGLRIRVFDRIMCFIN 720 
WD40-rpts                                                                                      

Query      721 CHLAAHLEAVNRRNADFDHIYKTMSFTRSSNAHNAPAAGVSTGSHTTKSANNANVNTEETKQDLAEADMVVFFGDFNYRL 800 
WD40-rpts                                                                                      

Query      801 FGISYDEARDFVSQRSFDWLREKDQLRAEMKAGRVFQGMREAIITFPPTYKFERHRPGLGGYDSGEKKRIPAWCDRVIFR 880 
WD40-rpts                                                                                      

Query      881 DTRTSPESECSLDCPVVASIMLYDACMDVTESDHKPVRCKFHVKIEHVDRSVRRQEFGRIIKTNEKVRALLNDLRYVPET 960 
WD40-rpts                                                                                      

Query      961 IVSSNSIVLQNQDTFVLRITNKCVKENAVFRILCEGQSTVREDEDTLELHPLGSFGFPRWLEVMPAAGTIKPDSSVEVSV 1040
WD40-rpts                                                                                      

Query     1041 HHEEFHTLEEFVDGIPQNWWCEDTRDKEAILVVNVQGGCSTETVCHRVHVRHCFSAKNLRIDSNPSNSKSQSLKKNEGDS 1120
WD40-rpts                                                                                      

Query     1121 NSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKSDGDSNSKSSKKS 1200
WD40-rpts                                                                                      

Query     1201 DGDSCSKSQKKSDGDTNSKSQKKGDGDSSSKSHKKNDGDSSSKSHKKNDGDSSSKSHKKSDGDSSSKSHKKSEGDSSSKS 1280
WD40-rpts                                                                                      

Query     1281 HKKNDGDSSSSYKSQSGKKNSNSSTVEESRNNHNKR 1316
WD40-rpts                                          

1 WD40-repeats found in QUERY=AT2G43900.1 (Len=1316):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   244-301      3.25  248.86  0.02724       37.5%     26.72

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  244-301    MDYVLDDGDDSPFKEGLAWQAHKGPVNSVIMSSYGD-LWSCSEGGVIKIWTWESMEKSL

   WD40 Template    TGECLR-----------TLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD--------