Input parameters:

  Query = AT2G43795.1 (Len=152)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G43795.1, Len=152):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDGSFHSPEWHAARLASLKTTHTLTWEEYKQKQKEEELKKQEVEADTDKLMREYRAQLDAERAMKLSKGRNYSSDISRKD 80  
WD40-rpts      (_____________________________________________________________________WD 1______

Query       81 RKERELTDRKCRDSKRKKSKKRKHSKRRSSDSSSSSESSSSDKDESRKSRSSSKRPKRERKHKSRGRHSKPK 152 
WD40-rpts      _______________________________________________________________)        

1 WD40-repeats found in QUERY=AT2G43795.1 (Len=152):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-144      2.79  229.72  0.04879       17.5%     -11.55

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-144    MDGSFHSPEWHAARLASLKTTHTLTWEEYKQKQKEEELKKQEVEADTDKLMREYRAQLDAERAMKLSKGRNYSSDISRKDRKERELTDRKCRDSKRKKSKKRKHSKRRSSDSSSSSESSSSDKDESRKSRSSSKRPKRERKHKS

   WD40 Template    TGECLRT----------LS---------------------------------------------------GHTSGV---------------------------TSVSFSPDGKRLVSGSEDG---------TIKVW-------D