Accession: AT2G41700.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT2G41700.1 (Len=1882)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G41700.1, Len=1882):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGSSKRQFKAMLRKNWLLKTRHPFVTSAEILLPTIVMLLLIAVRTRVDTTIHPAHSNIDKDTVVEVGKGNSPSFPEVLKL 80  
WD40-rpts                                                                                      

Query       81 LLAEGDFLAFAPDTDETNNMIDILSLKFPELRLVTKIFKDDIELETYITSAHYGVCSEVRNCSNPKIKGAVVFHEQGPHL 160 
WD40-rpts                                                                                      

Query      161 FDYSIRLNHTWAFAGFPNVKSIMDTNGPYINDLEMGINTIPTMQYSFSGFLTLQQVVDSFIIFASQQNNDLPLSHSNLSS 240 
WD40-rpts                                                                                      

Query      241 ALRFELPWTLFSPSVIRMVPFPTREYTDDEFQSIVKSVMGLLYLLGFLFPISRLISYSVFEKEQKIREGLYMMGLKDEIF 320 
WD40-rpts                                                                                      

Query      321 HLSWFITYALQFALCSGIITACTMGSLFKYSDKTLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAFFPYY 400 
WD40-rpts                                                                                      

Query      401 TVNDESVSMVLKVVASLLSPTAFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCLLMMLLDSILYCALGLYLDKVLP 480 
WD40-rpts                                                                                      

Query      481 RENGVRYPWNFIFSKYFGRKKNNLQNRIPGFETDMFPADIEVNQGEPFDPVFESISLEMRQQELDGRCIQVRNLHKVYAS 560 
WD40-rpts                                                                                      

Query      561 RRGNCCAVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGDALILGNSIITNMDEIRKELGVCPQHDILFPEL 640 
WD40-rpts                                                                                      

Query      641 TVREHLEMFAVLKGVEEGSLKSTVVDMAEEVGLSDKINTLVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMR 720 
WD40-rpts                                                                                      

Query      721 LTWQLIKKIKKGRIILLTTHSMDEAEELGDRIGIMANGSLKCCGSSIFLKHHYGVGYTLTLVKTSPTVSVAAHIVHRHIP 800 
WD40-rpts                                                                                      

Query      801 SATCVSEVGNEISFKLPLASLPCFENMFREIESCMKNSVDRSKISEIEDSDYPGIQSYGISVTTLEEVFLRVAGCNLDIE 880 
WD40-rpts                                                                                      

Query      881 DKQEDIFVSPDTKSSLVCIGSNQKSSMQPKLLASCNDGAGVIITSVAKAFRLIVAAVWTLIGFISIQCCGCSIISRSMFW 960 
WD40-rpts                                                                                      

Query      961 RHCKALFIKRARSACRDRKTVAFQFIIPAVFLLFGLLFLQLKPHPDQKSITLTTAYFNPLLSGKGGGGPIPFDLSVPIAK 1040
WD40-rpts                                                                                      

Query     1041 EVAQYIEGGWIQPLRNTSYKFPNPKEALADAIDAAGPTLGPTLLSMSEFLMSSFDQSYQSRYGSILMDGQHPDGSLGYTV 1120
WD40-rpts                                                                                      

Query     1121 LHNGTCQHAGPIYINVMHAAILRLATGNKNMTIQTRNHPLPPTKTQRIQRHDLDAFSAAIIVNIAFSFIPASFAVPIVKE 1200
WD40-rpts                                                                                      

Query     1201 REVKAKHQQLISGVSVLSYWLSTYVWDFISFLFPSTFAIILFYAFGLEQFIGIGRFLPTVLMLLEYGLAIASSTYCLTFF 1280
WD40-rpts                                                                                      

Query     1281 FTEHSMAQNVILMVHFFSGLILMVISFVMGLIPATASANSYLKNFFRLSPGFCFSDGLASLALLRQGMKDKSSHGVFEWN 1360
WD40-rpts                                                                                      

Query     1361 VTGASICYLGLESIFYFLVTLGLELMPVQKVMSFSIGEWWQNLKAFKQGAGSSSTEPLLKDSTGAISTDMEDDIDVQEER 1440
WD40-rpts                                                                                      

Query     1441 DRVISGLSDNTMLYLQNLRKVYPGDKHHGPKVAVQSLTFSVQAGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGK 1520
WD40-rpts                                                (__________________________WD 1_______

Query     1521 DIVASPKAIRQHIGYCPQFDALFEYLTVKEHLELYARIKGVVDHRIDNVVTEKLVEFDLLKHSHKPSFTLSGGNKRKLSV 1600
WD40-rpts      ___________________)                                                            

Query     1601 AIAMIGDPPIVILDEPSTGMDPVAKRFMWDVISRLSTRSGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKT 1680
WD40-rpts                                                                                      

Query     1681 RYGNHLELEVKPNEVSNVELENFCQIIQQWLFNVPTQPRSLLGDLEVCIGVSDSITPDTASASEISLSPEMVQRIAKFLG 1760
WD40-rpts                                                                                      

Query     1761 NEQRVSTLVPPLPEEDVRFDDQLSEQLFRDGGIPLPIFAEWWLTKEKFSALDSFIQSSFPGATFKSCNGLSIKYQLPFGE 1840
WD40-rpts                                                                                      

Query     1841 GGLSLADAFGHLERNRNRLGIAEYSISQSTLETIFNHFAANS 1882
WD40-rpts

1 WD40-repeats found in QUERY=AT2G41700.1 (Len=1882):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 23  1483-1540     2.98  237.66  0.03835       30.0%      8.01

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1483-1540   AGECFGFLGTNGAGKTTTLSMLSGEETPTSGTAFIFGKDIVASPKAIRQHIGYCPQFD

   WD40 Template    TGECLRTLSGHTSG-------------VTSVSFSPDGKRLVSG-----SEDGTIKVWD