Input parameters:

  Query = AT2G41610.1 (Len=310)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G41610.1, Len=310):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSEWEMDSDRKKTFFKCTKWQFEDTLDPINCPFHYFCDSIYAGDYPQITDVLVFFFVTVTYLTTLIVVVRKVISRRRRE 80  
WD40-rpts                                                                                      

Query       81 NDDDGDDDKARRYLLPSGPISLPLIILILAKGQRINTLFPISIFGPAILQLVQLSVLLFENNIEKEASFVFFEASTISGI 160 
WD40-rpts                                    (______________________________WD 1_______________

Query      161 LHASLYLDAVILPYYTGFDALVTSTFSGVCKSCICRKEPLIVGGKIVSYRGWSSTTFLVVGVLFLRIICKLCKEEGINKR 240 
WD40-rpts      ______________)                                                                 

Query      241 VLVVKNVVQGLTLLVLIRDCVYLAVMSPVEEPILFRVFVFGFLLLLICVYVITKVCCLVSRRQSKKTSDT 310 
WD40-rpts                                                                            

1 WD40-repeats found in QUERY=AT2G41610.1 (Len=310):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   111-175      2.80  230.17  0.04814       20.0%      5.27

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  111-175    KGQRINTLFPISIFGPAILQLVQLSVLLFENNIEKEASFVFFEASTISGILHASLYLDAVILPYY

   WD40 Template    TGECLRTLSGHTS-------------------GVTSVSFSPDGKRLVS------GSEDGTIKVWD