Accession: AT2G41220.1 - WDRR: WD40 Repeat Recognition

Input parameters:

  Query = AT2G41220.1 (Len=1629)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G41220.1, Len=1629):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MALQSPGATGASSSVSRLLSSAKLSSTKTIFSVDFVRSYCISKGTKRRNELSGFRGYSPLLKSSLRSPFSVKAILNSDRA 80  
WD40-rpts                                                                                      

Query       81 AGDASSSFSDLKPQVAYLEDIISERGACGVGFIANLENKATHKIVNDALIALGCMEHRGGCGSDNTSGDGSGLMTSIPWD 160 
WD40-rpts                                                                                      

Query      161 LFNEWAEKQGIASFDRTHTGVGMLFLPRDDNIRKEAKKVITSIFEKEGLEVLGWRDVPVEASIVGHNAKQTMPNTEQVFV 240 
WD40-rpts                                                                                      

Query      241 RIVKDDKVDDVERELYICRKLIERAVASESWASELYFSSLSNQTIVYKGMLRSEVLGLFYPDLQNDLYKSPFAIYHRRFS 320 
WD40-rpts                                                                                      

Query      321 TNTSPRWHLAQPMRFLGHNGEINTIQGNLNWMTSREASLRSPVWHGRENDIRPISNPKASDSANLDSAAELLIRSGRTPE 400 
WD40-rpts                                                                                      

Query      401 ESLMILVPEAYKNHPTLMIKYPEAVDFYDYYKGQMEPWDGPALVLFSDGKTVGACLDRNGLRPARYWRTSDNVVYVASEV 480 
WD40-rpts                                                                                      

Query      481 GVLPMDESKVTMKGRLGPGMMISVDLENGQVYENTEVKKRVASYNPYGKWVSENLRNLKPSNYLSSAILETDETLRRQQA 560 
WD40-rpts                                                                                      

Query      561 FGYSSEDVQMVIESMAAQGKEPTFCMGDDTPVAVLSQKPHMLYDYFKQRFAQVTNPAIDPLREGLVMSLEVNIGKRGNIL 640 
WD40-rpts                                                                                      

Query      641 EVGPQNVSQVVLSGPVLNERELEGLLGDPLLKSQILPTFFDIRRGIEGSLKKGLLKLCEAADEAVRNGSQVLVLSDRSDN 720 
WD40-rpts                                                                                      

Query      721 PEPTRPAIPMLLAVGAVHQHLIQNGLRMSASIIADTAQCFSTHHFACLIGYGASAICPHLALETCRQWRLSNKTVNMMRN 800 
WD40-rpts                                                                                      

Query      801 GKMPTVTMEQAQKNYRKAVNTGLLKVLSKMGISLFSSYCGAQIFEIYGLGNEVVEFSFRGSASQIGGLTLDELARETLTF 880 
WD40-rpts                                                                                      

Query      881 WVRAFSEDTAKRLENFGFIQFRPGGEYHGNNPEMSKLLHKAVREKSETAYAVYQQHLANRPITVFRDLLEFKSDRNPIPV 960 
WD40-rpts                                                                                      

Query      961 GKVEPASSIVERFCTGGMSLGAISRETHETIAIAMNRLGGKSNSGEGGEDPIRWKPLTDVVDGYSSTLPHLKGLRNGDTA 1040
WD40-rpts                                                                                      

Query     1041 TSAIKQVASGRFGVTPTFLVNADQLEIKVAQGAKPGEGGQLPGKKVSAYIARLRNSKPGVPLISPPPHHDIYSIEDLAQL 1120
WD40-rpts                                                                                      

Query     1121 IFDLHQVNPKAKVSVKLVSETGIGTVASGVAKANADIIQISGYDGGTGASPISSIKHAGGPWELGLAETQKTLIGNGLRE 1200
WD40-rpts                                      (________________________________________WD 1___

Query     1201 RVIIRVDGGFKSGVDVLIAAAMGADEYGFGTLAMIATGCIMARICHTNNCPVGVASQREELRARFPGLPGDLVNFFLYIA 1280
WD40-rpts      ____________________________________)                                           

Query     1281 EEVRGILAQLGYEKLDDIIGRTDLLKARDISLVKTHLDLSYLLSSVGLPKRSSTSIRKQEVHSNGPVLDDTLLQDPEIMD 1360
WD40-rpts                                                                                      

Query     1361 AIENEKTVHKTMSIYNVDRSVCGRIAGVIAKKYGDTGFAGQLNLTFTGSAGQSFACFLTPGMNIRLVGEANDYVGKGMAG 1440
WD40-rpts                                                                                      

Query     1441 GEVVILPVESTGFRPEDATIVGNTCLYGATGGLLFVRGKAGERFAVRNSLAQAVVEGTGDHCCEYMTGGCVVILGKVGRN 1520
WD40-rpts                                                                                      

Query     1521 VAAGMTGGLAYILDEDNTLLPKMNKEIVKIQRVTSPVGQTQLKSLIQAHVEKTGSSKGAMIVEEWDKYLAMFWQLVPPSE 1600
WD40-rpts                                                                                      

Query     1601 EDTPEANSDHILKTTTGDEEQVSSTLAEK 1629
WD40-rpts

1 WD40-repeats found in QUERY=AT2G41220.1 (Len=1629):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 24  1153-1237     2.88  233.51  0.04350       20.0%     14.83

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1153-1237   ANADIIQISGYDGGTGASPISSIKHAGGPWELGLAETQKTLIGNGLRERVIIRVDGGFKSGVDVLIAAAMGADEYGFGTLAMIAT

   WD40 Template    TGECLRTLSGHTSGVTSVS-------FS---------------PDGKRLVSGSEDGTIKV-----------WD------------