Input parameters:

  Query = AT2G36720.1 (Len=1007)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G36720.1, Len=1007):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MKEDLVPESNSSVWQSPVKRLAVDGECGEAGDRSRTSCKRIKTTQVNGFIVYTRTRKTKFTKLHEQEDENAGLSNHLEES 80  
WD40-rpts                                                                                      

Query       81 KPTSGVTSGFGGDMCRSSSVGETNVSGSSCVKNTLVESSSGKVVVIERLVTGGLAESPAVETDSSSLVDVVIDDINFVEL 160 
WD40-rpts                                                        (________________________WD 1_

Query      161 LHEAIPVEILSEGSLDFEVKRLGTKVRTMGKSYSVSEKKKHGSFKRTAQIYKSIVRMKKVNNLVPENVEVLAEPDFGREG 240 
WD40-rpts      ______________________)                                                         

Query      241 LDEQSHSVSLADKSILIRSRPETVRDLFETGLLDGLSVVYMGTVKSQAFPLRGIIRDGGILCSCSSCDWANVISTSKFEI 320 
WD40-rpts                                                                                      

Query      321 HACKQYRRASQYICFENGKSLLDVLNISRNTPLHALEATILDAVDYASKEKRFTCKRCKGPFPFSSLGHRGFLCKSCSEV 400 
WD40-rpts                                                                                      

Query      401 ETSQASLAATRTSTSAPACITSPVKSRLKITRKPSESTSISPVFMSSLGNSTRKITRKALRQALVGKAYLSASTNVSSQK 480 
WD40-rpts                                                                                      

Query      481 KCRSKFKKMLTQHSVTPKALKSVSLSVSSKKRSYRLARKDQGLHKLVFDRGGLPEGTELGYYARGQKLLGGYKMGAGIYC 560 
WD40-rpts                                                                                      

Query      561 YCCKCEVSPSLFEAHAGWASRRKPYFYIYTSNGVSLHEWATTFSHGRKYSANDNNDLCVICADGGNLLLCDSCPRAFHIE 640 
WD40-rpts                                                                                      

Query      641 CVSLPSIPRGNWHCKYCENKFTSEIAGEYNVNSSAVGQLEGVDPVDQLAGRCIRVVKNMEAETNGCVLCSGSDFCRSGFG 720 
WD40-rpts                                                                                      

Query      721 PRTIIICDQCEKEYHIGCLSSQNIVDLKELPKGNWFCSMDCTRINSTLQKLLLGGAEKLSDSSLGIIQTKQERNDVYSIS 800 
WD40-rpts                                                                                      

Query      801 DLDIRWRLISGKVTSPESRMLLSQALAIFHDCFDPIVDPLSGSNLIPRMVYGKTMQGQDYGGICCAVLTVNATVVSAGLL 880 
WD40-rpts                                                                                      

Query      881 RVFGREVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESIVVPAAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQM 960 
WD40-rpts                                                                                      

Query      961 VRFKGASMLQKPVDSHQIIDKTIETGASLEENFDLKQANELYVHPLC 1007
WD40-rpts                                                     

1 WD40-repeats found in QUERY=AT2G36720.1 (Len=1007):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   131-183      3.89  275.20  0.01211       25.0%      4.19

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  131-183    TGGLAESPAVETDSSSLVDVVIDDINFVELLHEAIPVEILSEGSLDFEVKRLG

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGK-------------RLVSGSEDGTIKVWD