Input parameters:

  Query = AT2G36530.1 (Len=444)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G36530.1, Len=444):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MATITVVKARQIFDSRGNPTVEVDIHTSNGIKVTAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVGNVNNIIGPALIG 80  
WD40-rpts                                 (____________________________________WD 1____________

Query       81 KDPTQQTAIDNFMVHELDGTQNEWGWCKQKLGANAILAVSLAVCKAGAVVSGIPLYKHIANLAGNPKIVLPVPAFNVING 160 
WD40-rpts      ________________________)                                                       

Query      161 GSHAGNKLAMQEFMILPVGAASFKEAMKMGVEVYHHLKSVIKKKYGQDATNVGDEGGFAPNIQENKEGLELLKTAIEKAG 240 
WD40-rpts                                                                                      

Query      241 YTGKVVIGMDVAASEFYSEDKTYDLNFKEENNNGSQKISGDALKDLYKSFVAEYPIVSIEDPFDQDDWEHYAKMTTECGT 320 
WD40-rpts                                                                                      

Query      321 EVQIVGDDLLVTNPKRVAKAIAEKSCNALLLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTG 400 
WD40-rpts                                                                                      

Query      401 QIKTGAPCRSERLAKYNQLLRIEEELGSEAIYAGVNFRKPVEPY 444 
WD40-rpts                                                  

1 WD40-repeats found in QUERY=AT2G36530.1 (Len=444):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    28-105      2.93  235.68  0.04072       20.0%     -8.07

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   28-105    SNGIKVTAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVGNVNNIIGPALIGKDPTQQTAIDNFMVHELDGTQNEWG

   WD40 Template    TGECLRTLSGHTSGVT---------SVSFSPDGK-----------------RLVSGSE------------DGTIKVWD