Input parameters:

  Query = AT2G35075.1 (Len=423)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G35075.1, Len=423):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGINEFSSFGRRGSGFQEHNGESPPFPWIPALWVLMIESCRRFVQSMQAKAFSGSLTAGGNQAKVLCRTCFWICPLSRKF 80  
WD40-rpts                                                                                      

Query       81 LEIMYPVVPRLSCARGTVLEPVSLDAGHAISLDLETAALKMSADLNRTEIPSSVSSKALLYESLKPSIWWVSYAFANLMS 160 
WD40-rpts                                                                                      

Query      161 PPSTHSPFQAFLVKSSNLEGFTLTEDEAESVESVVMLLQKDDFKDLKTLGKMETIIQLLQTIPNQEHCSSKWCNRRVAIQ 240 
WD40-rpts                                                                                      

Query      241 CVDFSKQTIIRDVWRLLDSIAVSLASQQKKSSVSLKEVSPSLSWLSSCNIPMPGLAIEASRYGILSVHNKVPEIVLLSWL 320 
WD40-rpts                                                                          (___________

Query      321 TQTMEAALWLTGNFHDVAAIVSSSLFSSRVKEIRIRLQEHHDLLLAMLPAVVFVAEVRLSVVPEATQAHRNSSYTEVSFL 400 
WD40-rpts      __________________________________WD 1__________________________________________

Query      401 ELATSVKASPLLGRHLLCKEHYF 423 
WD40-rpts      __)                    

1 WD40-repeats found in QUERY=AT2G35075.1 (Len=423):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  6   309-403      2.97  237.33  0.03873       20.0%     21.48

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  309-403    NKVPEIVLLSWLTQTMEAALWLTGNFHDVAAIVSSSLFSSRVKEIRIRLQEHHDLLLAMLPAVVFVAEVRLSVVPEATQAHRNSSYTEVSFLELA

   WD40 Template    TGECLRTLSG----------------HT-----------SGV-------T-----------SVSFSPDGKRLVSG--------SEDGTIKVWD--