Input parameters:

  Query = AT2G32700.6 (Len=785)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT2G32700.6, Len=785):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAQSNWEADKMLDVYIYDYLVKKKLHNTAKSFMTEGKVSPDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEAAAAYIE 80  
WD40-rpts                                                                                      

Query       81 AQQGKAKEQQMQIQQLQMMRQAQMQRRDPNHPSLGGPMNAIGSEGMIGQSNASALAAKMYEERMKQPNPMNSETSQPHLD 160 
WD40-rpts                                                                                      

Query      161 ARMALLKSATNHHGQIVQGNHQGGVSAALQQIQSRTQQPTEIKTEVNLGTSPRQLPVDPSTVYGQGILQSKPGMGSAGLN 240 
WD40-rpts                                                                                      

Query      241 PGVSGLPLKGWPLTGIEQMRPGLGGPQVQKSFLQNQSQFQLSPQQQQHQMLAQVQAQGNMTNSPMYGGDMDPRRFTGLPR 320 
WD40-rpts                                                                                      

Query      321 GNLNPKDGQQNANDGSIGSPMQSSSSKHISMPPVQQSSSQQQDHLLSQQSQQNNRKRKGPSSSGPANSTGTGNTVGPSNS 400 
WD40-rpts                                                                                      

Query      401 QPSTPSTHTPVDGVAIAGNMHHVNSMPKGPMMYGSDGIGGLASSANQLDDMDQFGDVGALEDNVESFLSQDDGDGGSLFG 480 
WD40-rpts                    (_______________WD 1_______________)   (_________________WD 2_____

Query      481 TLKRNSSVHTETSKPFSFNEVSCIRKSASKVICCSFSYDGKLLASAGHDKKVFIWNMETLQVESTPEEHAHIITDVRFRP 560 
WD40-rpts      ___________)     (_________________WD 3________________)   (_________________WD 

Query      561 NSTQLATSSFDKTIKIWDASDPGYFLRTISGHAAPVMSIDFHPKKTELLCSCDSNNDIRFWDINASCVRAVKGASTQVRF 640 
WD40-rpts      4________________)    (_________________WD 5_________________)  (_______________

Query      641 QPRTGQFLAAASENTVSIFDIENNNKRVNIFKGHSSNVHSVCWSPNGELVASVSEDAVKLWSLSSGDCIHELSNSGNKFH 720 
WD40-rpts      WD 6_______________)    (________________WD 7________________)   (______________

Query      721 SVVFHPSYPDLLVIGGYQAIELWNTMENKCMTVAGHECVISALAQSPSTGVVASASHDKSVKIWK 785 
WD40-rpts      ___WD 8________________)(__________________WD 9_________________)

9 WD40-repeats found in QUERY=AT2G32700.6 (Len=785):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   415-450      4.76  311.41  0.00395       17.5%      9.46
  WD 2:  Seg  6   454-492      6.67  390.15  0.00034        7.5%     42.08
  WD 3:  Seg 10   498-536      8.89  481.73  2.0e-05       30.0%     54.38
  WD 4:  Seg 14   540-578      9.65  513.41  7.5e-06       35.0%     52.44
  WD 5:  Seg 18   583-622      8.57  468.66  3.0e-05       40.0%     50.36
  WD 6:  Seg 22   625-660      6.72  392.30  0.00032       22.5%     50.80
  WD 7:  Seg 26   665-702      8.24  455.04  4.6e-05       37.5%     51.14
  WD 8:  Seg 30   706-744      8.64  471.73  2.7e-05       27.5%     57.31
  WD 9:  Seg 34   745-785      8.70  473.90  2.6e-05       30.0%     53.23

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  415-450    -------AIAGNMHHVNSMPKGPMMYG-SDGIGGLASSANQLDD
   WD 2  454-492    -FG-DVGALEDNVESFLSQDDGDG--G-SLFGTLKRNSSVHTET
   WD 3  498-536    -FN-EVSCIRKSASKVICCSFSYD--G-KLLASAGHDKKVFIWN
   WD 4  540-578    -LQ-VESTPEEHAHIITDVRFRPN--S-TQLATSSFDKTIKIWD
   WD 5  583-622    -GY-FLRTISGHAAPVMSIDFHPK--KTELLCSCDSNNDIRFWD
   WD 6  625-660    -AS-CVRAVKGA---STQVRFQPR--T-GQFLAAASENTVSIFD
   WD 7  665-702    -NK-RVNIFKGHSSNVHSVCWSPN--G-ELVASVSED-AVKLWS
   WD 8  706-744    -GD-CIHELSNSGNKFHSVVFHPS--Y-PDLLVIGGYQAIELWN
   WD 9  745-785    TMENKCMTVAGHECVISALAQSPS--T-GVVASASHDKSVKIWK

   WD40 Template    TGE-CLRTLSGHTSGVTSVSFSPD--G-KRLVSGSEDGTIKVWD